Sander lucioperca (pikeperch): 116043571
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Entry
116043571 CDS
T07345
Symbol
cacna1fa
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D isoform X1
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04010
MAPK signaling pathway
sluc04020
Calcium signaling pathway
sluc04260
Cardiac muscle contraction
sluc04261
Adrenergic signaling in cardiomyocytes
sluc04270
Vascular smooth muscle contraction
sluc04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116043571 (cacna1fa)
04020 Calcium signaling pathway
116043571 (cacna1fa)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
116043571 (cacna1fa)
09153 Circulatory system
04260 Cardiac muscle contraction
116043571 (cacna1fa)
04261 Adrenergic signaling in cardiomyocytes
116043571 (cacna1fa)
04270 Vascular smooth muscle contraction
116043571 (cacna1fa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sluc04040
]
116043571 (cacna1fa)
Ion channels [BR:
sluc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116043571 (cacna1fa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
116043571
NCBI-ProteinID:
XP_031146214
LinkDB
All DBs
Position
12:31602350..31625772
Genome browser
AA seq
2117 aa
AA seq
DB search
MDKKDAPLGGDGGKTDTLGSTGSARKRGGGAKKAMQANKSALRAPRALCCLTLSNPIRMA
ALALVEWKPFDIFILLAIFANCVAMGVTKPYPDDDSNATNHQLEQVEYVFLVIFTIETFT
KILAYGLVMHPSAYIRSGWNLLDFVIVIVGLFSVIAEGMTDHKPGEAHHAAGKPGGLDVK
ALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIGMLVMFVIIIYAIIGLELFIGRM
HKTCYSTSTGLMAEDDPSPCAFAGSGRFCVGNGTECRGKWEGPNGGITNFDNVFFAMLTV
FQCITMEGWTDVLYWMNDAIGFEIPWVYFVSLVIFGSFFIINLVLGVLSGEFSKEREKAV
ARGELQKAQESKQMEEDMIGYMDWLIEAEDVDEEGNKRAAIAKKKMMKKFGWYKHSEDGG
AESDSDDDIAYLDDDSGFCASLMAKMMANSFCDQLCQLNHTMRKNCRVAVKTNNFYWLVL
LLVFLNTVASASEHYGQPKWLTEMQERANKILLLLFTLEMLMKMYAFGLQIYFMALFNRF
DCFVVCGGILETLLVEMEFIPPIGISVLRCIRLLRIFKMTRHWAALSDLVNSLLNSMKAI
CSLLLLLFLFLIIFALLGMQLFGGKFNFDETQMKRSTFDSFPQALLTCFQILTGEDWNAV
MYDGIMAYGGPIFPNMVVCIYFVILFVCGNYILLNVFLAIAVDNLAGGGGKTKVEEKKEE
EEEWDDDEEKEDEDAANEEDDWQENEELRAIEGLEGVAPLKPEFSGPKEKIVPIPDGSSF
FILGKKNCLRVACHNLIHHPYFTNFILIFIIMSSISLAAEDPIKSHSFRNIVLGYADYVF
TSVFTVEIVLKMTVYGAFLHTGSFCRNAFNLLDLLVVSVSLTSFFLHSSAISVVKILRVL
RVLRPLRAINRAKGLKNVVQCVFVAIRTIGNILIVTTLLQFMFACIGVQLFKGRFYSCTD
EAKHTPDECKGSFVIYQDGDMNHPMVKERIWENSDFNFDNVLMGMLALFTVSTFEGWPQL
LYRAVDANAINRGPIYNYRVEISIFFIIYIIIIAFFMMNIFVGFVIITFREQGEAEFKNC
ELNKNQRQCVYYALKAQPIKIYIPKNPSQLKFWKIINSSQFEYIMFVLILGNTLTLAVQH
YEQSKLFTSIMDILNMIFTVVFTIEMVIKLLALRAHHYFIDPWNSFDALIVVGSVLDIAV
SELSGGGGHGEGKGESGKVSITFFRLFRVLRLVKLLSKGEGIRTLLWTFVKSLQALPYVG
LLIAMIFFIYAVIGMQTFGKVAIDDDTHINRNCNFQTFFMAVLVLFRCATGEQWQEIMLA
ALPGRRCDPEADTEPGEEFSCGSNLAYIYFISFFMLCAYLIINLFIAVIMDNFEYLTRDW
TVLGTHHLDEFKRVWSDYDPEATGRIKHIDVVTLLRRIQPPLGFGKLCPHRVACKRLVAM
NVPLHSDGTVTFSATLFALVRTSLKIKTEGPIDQQNEELKVIIKKLWKRTKPKLIDEVIP
PPRGDEVTCGKFYASFLIQDYFKKFRKRKERERKSKRKDRAASLQLGLRTLQDLAPEMRL
AMACDLEEEEGLDGEMTGDDIFDSERGTSANTTHASTSLPPIDTLVEQVTVLMEPQPKTA
NGGVITEQVMGLQEHQRPGSELAGVSVVTEQPVRSNPLPIRVDSISELPPPSPPCLPPPP
SPEIAQVVVEELVVVEQSVVVEEPVVVEEPVAVEEPIVVEEPIIVEEPIIVEEPVVVEEL
VVVQEPVVVEEPVVAATNGVTEQVYSIEGDAANLPSEDRYVYPEAVSPETGYHGQSLERA
GSIGGIHYDTHGNRFDSNGYNDTNMNGSVIESPIPYATNGYNGNGYSDNSNGSIISINGN
GSTINGIENGSTFGGYTGNGYTGNENGTHFRRRLLPPIPRGRTPSFNLQCLRPQTNGDDL
PIPGSYRGNTSPYRSRLQTQASLDARPSSVSSMTSASWVNTTSAGTATLPGIMGPAGRRG
KLIYSPMILVDEATGNSQPLWSDGSASLPAGSRAPGWYPGQTRTFGSMRMPPINQGFLDK
GSADSLVESILISEGLGVYARDPKFVSFAKREIAEACHMSMDDMEIAATDLIARGASQSI
SRFEEDLADEMNCVISY
NT seq
6354 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaaagatgccccccttgggggggatggaggaaaaacagacaccctcgggtcg
actggctccgccagaaaaagaggagggggggccaagaaggcgatgcaggccaacaagtct
gccctcagggccccccgagctctttgctgcctcaccctcagcaaccccatccgcatggca
gcactggccctagtagagtggaagccctttgatattttcattctacttgccatttttgcc
aattgtgtggccatgggcgtcaccaagccgtaccctgatgatgactccaacgctaccaat
caccaactggaacaagttgagtatgtcttcctcgtcatcttcaccatcgagaccttcact
aaaattcttgcctacggcttagtcatgcaccccagcgcctacatacgcagcggatggaac
ttgcttgatttcgttatcgtcattgtcgggttgttcagtgtgatagcagagggcatgacg
gatcataagccaggagaggcccatcatgctgcaggaaaacctggaggcctggatgtcaaa
gctctcagagcattcagggtgttacgaccgcttcggcttgtatctggagtgccaagttta
caaattgtgttgaactccatcatgaaagccatggtcccccttctgcacatcggtatgttg
gtcatgtttgtcatcatcatctatgctatcatcggcttggagctttttatcggcaggatg
cacaagacgtgctactccaccagcacaggtctcatggcggaagatgatccgtcaccttgt
gcgtttgccgggagcgggcgcttttgtgtcgggaacgggactgaatgcaggggcaagtgg
gagggccccaatggcggcatcacaaacttcgacaacgtttttttcgccatgctgacagtt
ttccagtgcatcactatggagggttggacagatgttctctactggatgaatgatgccatt
ggctttgagattccatgggtttactttgtttctctggtcatctttggatcctttttcatt
atcaatctcgtattgggtgtgttgagcggagagttctccaaggaaagagaaaaggccgtg
gcgcgcggtgagctgcagaaggcacaggagagcaagcagatggaggaggacatgataggc
tacatggactggctcatagaggccgaggatgtggacgaagaaggaaacaaacgtgctgcg
atagcaaagaaaaagatgatgaagaagtttggctggtacaagcacagtgaggatggtgga
gcagagtcagactcagatgatgatatagcatacctcgatgatgacagcggcttctgtgct
tctctcatggcaaagatgatggccaatagcttctgcgaccagttgtgccagctgaatcat
acaatgaggaagaactgccgtgtggccgtcaagaccaataacttttactggttggtgctt
ctgctggtgtttctcaacacagtggccagtgcctccgagcattacggacagccaaagtgg
ctcacagaaatgcaagagcgagccaacaagatcctgctgctgctcttcactctggagatg
ttgatgaagatgtacgcctttggcctgcagatttatttcatggcgctattcaaccgcttt
gattgctttgtggtgtgtggcggcatcctcgagacgctgctcgttgagatggaattcatc
ccgcccatcggcatctctgtgctgcgctgcatccgactgctcaggatattcaagatgact
cggcactgggctgctttgtctgacttggtcaactcgctgctcaactccatgaaagctatc
tgctcccttctgctcctgctattcctcttcctcatcatctttgccttgctgggcatgcag
ttgtttggaggcaaattcaactttgacgagactcagatgaagagaagtacttttgactcc
ttccctcaggctctgctcacttgtttccagatcctcaccggagaggactggaacgctgtg
atgtacgacggcattatggcctatggaggtcccatcttccccaacatggtggtgtgcatc
tactttgtcatcctctttgtctgtggtaactacattctgctcaatgtcttcttggctatc
gctgtggacaacttggcaggaggcggcggaaagaccaaagtcgaggagaaaaaggaagag
gaagaagagtgggatgatgatgaagagaaagaggatgaagatgcagcgaacgaggaggat
gactggcaggaaaacgaggagctgagggccatcgagggactggagggggttgctccatta
aagcctgagttctcagggcccaaagagaagatcgtcccaatccctgatggaagctccttc
ttcattcttggaaagaaaaactgtttgcgagtcgcctgccacaacctcatccatcacccc
tacttcaccaacttcattctcatcttcatcatcatgagtagtatttccctggctgctgag
gatccaatcaaatcccactcattcaggaacatagtgctcggttatgccgattatgttttc
acttcagttttcacagtggagattgtactgaagatgacagtctacggagcttttctgcac
accggctccttctgtagaaatgctttcaaccttcttgacctgctggttgtcagtgtgtcg
ctcacgtctttctttttacattcaagtgctatctctgtggtcaagatcctccgagtgctg
cgagtgctcaggcctcttcgagccattaacagagccaagggactaaagaatgtggtgcag
tgtgtgttcgtggcgatccgcaccatcggaaacatcttaattgtcacaacactccttcag
ttcatgtttgcctgtattggagtgcagctcttcaagggcagattctacagctgcacagat
gaagccaaacacactcctgatgagtgcaagggatcgtttgtgatctatcaggacggggat
atgaaccaccccatggtgaaagagaggatttgggaaaacagtgatttcaactttgacaat
gtgctcatgggcatgctggctttattcactgtgtcgacatttgaaggctggccacagctc
ctttaccgggccgtggacgccaacgccatcaatcgagggcccatttacaactacagagta
gaaatctccatctttttcatcatctacatcatcatcatcgccttcttcatgatgaacata
tttgtgggttttgtcatcatcacatttcgagagcaaggagaggcggaattcaaaaactgt
gagctcaacaaaaatcaacgccagtgtgtgtactatgctctcaaagctcagcctataaag
atttacattcctaaaaacccatcccagctcaaattctggaaaattatcaactccagccag
tttgaatacatcatgtttgtgctgattctgggaaacaccctcaccctggctgttcagcat
tacgagcagtctaaactattcacctccatcatggacatcctcaacatgatcttcactgtg
gttttcactatagagatggttatcaagttactggctctgcgggctcatcactatttcatc
gatccatggaattcatttgacgctttgattgtcgtggggagcgtgttggatattgccgtc
tctgagttaagcggaggaggcggccatggtgagggtaaaggagagagtggaaaagtgtcc
atcacatttttccgtctattccgagtcttgaggttggtgaaactgctcagcaaaggagag
ggcattcgaacgctcctctggacttttgttaagtcgctccaggccctgccttatgttggt
ctgctcatcgcgatgatctttttcatctatgctgtgattggcatgcagacatttgggaaa
gtggccatcgatgacgacacacacatcaacagaaactgcaacttccagactttcttcatg
gctgttctggtgctcttccgatgtgccacaggagagcagtggcaggagattatgttggca
gctctgccaggcagacgctgtgacccagaagctgacactgagcctggtgaagagttctcc
tgcggtagcaatttggcctacatctacttcatcagcttcttcatgctctgtgcttacctg
attatcaacttgttcattgccgtcatcatggacaactttgaatacctgacacgagactgg
acggtgctcggcactcaccacctggacgagtttaagagagtttggtctgactacgatcca
gaggccaccggtcgtataaaacacatcgatgtcgtcacattgctgcgtaggattcagcca
cctcttggttttggaaaactgtgtcctcatcgtgttgcatgcaagagactggttgctatg
aacgtcccactgcacagcgatgggacagtcaccttcagcgctactctgtttgctcttgtg
cgaacctcgctcaagatcaagactgaaggccccatcgaccagcagaatgaagagctgaag
gtgatcattaagaagctctggaaacgcaccaagcccaagcttattgatgaagtcattcct
ccccctagaggggatgaggtgacttgtgggaagttttatgccagcttcttgattcaggac
tattttaaaaagttccgcaaaagaaaggagagggagaggaaatccaaaaggaaggacagg
gcagcttctctgcagctcgggctgcggacgctgcaggacctagctccagagatgcgtctg
gcgatggcctgtgacctggaagaagaggagggtttggatggagagatgaccggtgatgac
atattcgacagcgagcgcggaacctctgcaaacacaacgcatgccagcacgtcgctgcca
cctatagacacgctggtagaacaggtaactgtgctcatggaacctcagcccaagacagcc
aacgggggtgtgatcacagagcaggtgatgggcctgcaggagcaccagagaccagggtca
gagctggcgggagtcagcgttgtaacagagcagcctgtgaggtccaatcctctgccaatc
agggtggactccatcagcgagttgcctcctccttctcctccttgtcttccccctcctcct
tccccagagatagcacaggttgtagttgaagaactggtcgtagttgaacaatcggtcgta
gttgaagaaccggtagtagttgaagaacccgtcgcagttgaagaacccatcgtagttgaa
gaacccatcatagttgaagaacccatcatagttgaagaaccggtcgtagttgaagaactg
gttgtcgttcaagaaccggttgtagttgaagaaccggttgtggcggctacaaacggagta
actgagcaggtttacagcattgaaggggatgctgcaaacctaccatcagaagacaggtac
gtgtatccagaagctgtctctcctgagacaggctaccatggacagagcctggaaagagct
ggcagcattggggggatacactatgatactcatggcaacaggtttgatagcaacggttat
aatgacaccaacatgaatgggagtgttattgaaagccccattccctatgccacaaatgga
tataatgggaatggatactcagacaacagcaatggcagtatcattagcatcaatgggaat
ggaagtacaataaacggcattgaaaatggcagcacgttcggtggctacactgggaatggc
tacactggaaatgagaatggcacacatttcaggagacgactgcttcctcccataccaaga
ggtcgtacgccgtcctttaacttacagtgtctgaggccacagaccaatggggatgacctc
cccatcccagggagctaccgtggaaacacatccccatacagatcccgtctacagacccag
gccagcctggacgcccggcccagcagtgtgtcctcgatgacatctgcctcctgggtgaac
accacatcagctggcaccgctactcttccaggaataatgggccccgcgggacgcagaggc
aagctcatctacagccctatgatccttgtggacgaagccaccggcaacagccagccgctg
tggagcgacggctctgccagcctccctgcagggagcagggcacccggctggtaccccggt
cagaccaggaccttcggcagcatgaggatgccaccaatcaaccagggcttcttagataaa
ggcagtgcagacagtctggtcgagtcgatcctgatctccgagggtctcggtgtctacgcc
agggaccccaagtttgtgagctttgccaagcgggagattgctgaagcctgtcacatgagt
atggacgacatggagatcgctgccactgacctcatagctcgcggagccagtcagtccatt
tctcgctttgaggaggacctggctgatgaaatgaactgcgtgatttcttactga
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