Sander lucioperca (pikeperch): 116044571
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Entry
116044571 CDS
T07345
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116044571 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116044571 (lig4)
Enzymes [BR:
sluc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116044571 (lig4)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116044571 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
116044571
NCBI-ProteinID:
XP_031147734
Ensembl:
ENSSLUG00000025858
LinkDB
All DBs
Position
24:complement(13187608..13193860)
Genome browser
AA seq
911 aa
AA seq
DB search
MEGTSRSDAAGQPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILKEFIESWRKFHSALHK
DNPKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSEGNLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAMANIRSVEKQMGSSPFYIQTKLDGERIQLHKDGDVYKYFTRNA
FEYTQQFGGSPLEGSLTPYIHNNFKSHIVNCILDGEMMAYSPTTDTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRYETLQTVFSPVKGRIHLVPKTDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGAYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGKASGKLASRHLRIDGDEPEKKKKRTQPAKPKKVIGIIDHFKPQDLTGVTKE
TDMFEDVEFCILNGTEDHPKAELEKGVASCGGVVVQNAGRDTYCVIAGVENMRVKNLVLS
DQHDVVWVTWLLECLAQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLW
EVFGRISDAQASAAANVSQVERRCGWEDLPTSMFRPFEVYMDSYADIGDPKTAIPATCLD
IRALEFCYHGGSVVRKLEEGVTHVIITEETRLVDLRTLRRCFRRKFKIVRESWVTDSITA
GHLMNDTDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccagaagcgatgctgcaggtcagccctctgttgctgctcaggttcct
ttccttcatctctgtaccacattagagaaaatccagaagtctaaactccgtccagataaa
tccaagatcctcaaggaattcattgagtcgtggaggaagttccattctgccctccacaaa
gacaaccctaaaacaacagactctttctacccagccatgcgcctcatagtcccctccttc
gaacgagagcgtatggcgtatggcatcaaagaaagcatgttagctaaactctatattgac
gtattaggcctcccaaagaatggccctgaggccaataaactgttgaactaccgtgctccc
actacatcccagggagaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cggtgcaccagcgaaggaaacctcagcattaaagaagtcaatgactttctggactcggtg
gctatcaacaatgctggcaagcagaaggatcttgtgaaaaagagtctgctgcatctcatc
acccagagctcggctctcgagcaaaagtggctcatcagaatgattctgaaggacatgaag
cttgggatcagcaaagaaactgttctccaagtcttccacccagacgctcctgagctctat
aatgtcaacacagacttaaacaaggtctgccagcagctccacaacccctccgtgtctcta
agcgaagtttcaatcggactcttctctgcttttaagcctatgttggcggctatggcgaac
atccgcagtgtggagaaacagatgggaagcagccctttttacattcagaccaagctggat
ggagagcgtatacaactgcacaaagacggggatgtgtacaagtacttcacccgaaatgcc
tttgaatacacccagcagtttggaggatccccactggagggctcactgacaccttacatc
cacaacaattttaaaagccacattgtgaactgtatcctcgatggtgagatgatggcgtac
agcccgaccacagacaccttcatgcagaaagggagcaaattcgacatcaagagactcatg
gacgactccgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaatgaccag
aagcttggcaaggaaacactgaagaagcgctacgagacccttcagacagttttcagtcca
gtcaagggaaggatacacctggtgccaaagacggatgccagaaccatgcaggaggtggtg
aatgccctgaatgacgccattgacagccgagaagagggaatcatggtgaaggatcctctg
tccatctacaaacccgacaagcggggggagggatggctgaaaataaagccagaatatgtg
gatggattgatggatgagctcgacctgctgattgttggtgcctactggggcaaagggaga
cggggtggtatgatgtcccacttcttatgcgccgttgccgaagctccaaagcctggcgag
aaaccctcggttttccacacactctgccgcatcggctctggctacaccatgaaggagttg
tatgacctcggtttaaagctcgccaagcactggaaagtctatcggaaaaatgacccaccg
gcatccattttgtgcggaaccgagaaacccgaagtttacatcgaaccctgcaactcggtc
atcctccaggtcagggcggctgaaatagtcggaagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcaaggcgtccgggaaactcgcctctcggcacctt
cgcatcgacggtgacgaaccggaaaagaagaagaagcgcactcagccagccaaacccaag
aaggtgatcgggatcatcgaccactttaagccccaggacctaaccggggttaccaaggag
acggatatgttcgaggatgtggagttttgtatcctgaacggcacagaggatcaccccaag
gctgagctggaaaagggcgtggccagttgtggaggtgtcgtggttcaaaacgcagggcgg
gacacctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggttttgtcc
gaccagcatgacgtggtgtgggtcacctggctgctggagtgccttgcccagaaggaagtg
gtcccatggcaaccgcgccacatgatccacatgtcgccctcgaccagggagcactttgcc
aaggagtacgacagctacggggacagctactttgtggacacagacgagcagcagctgtgg
gaggtgtttggccggatcagcgacgcgcaggcgtctgcggcggcgaacgtcagccaggtg
gagcggcgttgtggctgggaggatcttcccaccagcatgttcagacccttcgaggtttac
atggacagctacgccgacataggagaccctaaaaccgccatacctgccacctgcttggac
atcagggcgctggagttttgctaccacggagggagtgtggtgcggaagttagaggaagga
gtcactcatgtcattatcacagaggaaacaagacttgtggatttaaggactctgaggcgc
tgctttaggaggaagtttaagattgtaagagaatcttgggtgacggattcaatcacagca
gggcatctgatgaatgacactgactacttagtttaa
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integrated database retrieval system
