Sander lucioperca (pikeperch): 116050622
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Entry
116050622 CDS
T07345
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X2
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116050622 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116050622 (ddx3xa)
03041 Spliceosome [BR:
sluc03041
]
116050622 (ddx3xa)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116050622 (ddx3xa)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116050622 (ddx3xa)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116050622 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
116050622 (ddx3xa)
Spliceosome [BR:
sluc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116050622 (ddx3xa)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116050622 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
116050622
NCBI-ProteinID:
XP_031156707
Ensembl:
ENSSLUG00000000404
LinkDB
All DBs
Position
8:complement(14533512..14553326)
Genome browser
AA seq
725 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPKNAGNAYSAGRQYG
YSVAPVNLYSPGWDGGRSNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFN
QPLQNAGFSGGEGNWGGAPRDAAYNSFGGRNDQRSKSTFFNERGAGSRGRYERGGFSSGG
NNRWSEESREEDWSKLSAPNERLENELFSASNTGINFEKYDDIPVDATGNNCPPHIESFH
DVDMGEIVMANIGLSRYDCPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIY
QEGPGDALQAAKSSGQDNGRYGRRKQYPIALVLAPTRELALQIYDEGRKFAYRSRLRPCV
VYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNFLILDEADRMLDMGFEP
QIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKV
VWVEDGDKRSFLLDLLNATGKESLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD
REEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG
LATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTTRGRSKRFSGGFGARD
YRQTPGGSANSFSSNRGGGGGGRSAGGHGGGNRGFGGGSFGGNFYGNDGYGGNYSHSGSV
DWWGN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcattgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaactggcaggcgttacattccacctcacttg
agaaacaaagatgcaccaaaaaacgcaggaaatgcttattccgctggtagacagtacggt
tattcagtggcaccagtaaatctctattcacctggatgggacggtggacgcagcaatgga
tttgtgaatgggtaccacgacaaccgcacaaatgggggctttggagggcgaggaccccct
cgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtggaggctcgtttaat
caaccattacaaaatgcagggtttagtggtggcgaaggcaactggggaggagctcccagg
gatgctgcctacaacagctttggcggacgtaacgaccaaaggtcaaagtccaccttcttc
aatgaacgtggagcaggctcaaggggaagatatgagcgtgggggcttttctagtggagga
aacaaccgctggtcagaggaatctagagaggaggattggtccaagctctccgctcccaac
gagcgcctggaaaacgagcttttctctgcgagcaacactgggataaactttgagaaatat
gatgatattcccgtggatgccactggaaacaactgcccgccacacattgaaagcttccat
gatgtggacatgggggagattgttatggcgaacatcggcctgagtcgctacgattgtccc
actccggttcagaagcacgctatccccatcatcaagtccaagagagacctgatggcctgc
gcccagactggctccggtaagactgccgctttcttgctgccagtgctgagtcagatctac
caagaggggccaggagatgctctgcaggctgccaagagctctggacaggacaacgggagg
tatggccgccgcaagcagtacccaatcgctcttgtcctggctcccaccagagagctcgct
ctgcagatctacgatgagggcagaaagtttgcctatcgctcccgtctgcgtccctgcgtg
gtgtatggcggtgcggatattggtcagcagatcagggagttggagagaggctgtcacctg
ctggtggccacacctgggcgtctggttgacatgatggagaggggaaagatcggtctggac
tattgcaacttcttgatcctggatgaggctgaccgcatgttggacatgggttttgagcca
cagatcagacgcattgtggagcaggatacaatgccgcctaaaggcatccgtcagaccatg
atgttcagtgccactttccccaaggagatccagatcctggctcgtgacttcctggaggac
tacattttcctggcagtgggccgagttggttccacttcagaaaacatcacccagaaggtg
gtctgggtggaggacggcgacaagaggtccttcctccttgacctgctcaatgccacaggc
aaagaatcgctgactctagtgtttgtggagaccaagaaaggcgccgacgctctggaagac
ttcctctaccacgagggttacgcctgcaccagcatccacggagatcggtcccagagagac
agagaggaagctctgcatcagttccggtcaggacgctgccccatcttggtggctacagct
gtggctgccagaggtctggacatcagcaatgtgaagcacgtcattaactttgatttgccc
agtgacatcgaggaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggt
ctggccacgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacatc
ttggtggaggccaagcaggaggttccctcctggcttgaaagcctggcctacgagcaccag
cacaagagcaccacccgtggacgctctaagaggttctctggcggattcggagctagagac
taccgtcagacccctggtggctccgctaacagcttcagtagcaaccgtggtggaggtggt
ggtgggcgcagcgctggaggccatggaggaggaaaccgtggcttcggtggagggagcttt
gggggcaacttctacggcaacgacggctacggaggaaattacagccactctgggagtgtg
gattggtggggcaactag
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