Sander lucioperca (pikeperch): 116062023
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Entry
116062023 CDS
T07345
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03250
Viral life cycle - HIV-1
sluc04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116062023 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
116062023 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116062023 (samhd1)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116062023 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
HD_assoc_2
PDEase_I
Motif
Other DBs
NCBI-GeneID:
116062023
NCBI-ProteinID:
XP_031172324
Ensembl:
ENSSLUG00000001794
LinkDB
All DBs
Position
12:25068733..25081032
Genome browser
AA seq
624 aa
AA seq
DB search
MENRKRPLGEVNPNDSFKTPEKRVSVVRLLDSDYMRWGVEETCRYLRGEGLGEWEDTFKA
QKITGVGLRYLKDADLEKIGIKYLGDRLQILHSLRKLWQIEAEANKVFNDSIHGHVELHP
LLIKIIDTPQFQRLRNLKQLGGTYFVFPGASHNRFEHCIGVGHLAGRLVQALNDRQPELF
ISRRDILCVQIAGLCHDLGHGPFSHMFDGKFIPKARPGISWKHEKASLDMFDYLVKDNGL
KPVMEQHGLVLPEDLEFIKEQIAGPPDTNASQGQKWPYKGRPEDKSFLYEIVANRRNGID
VDKWDYFARDCYHLGIQNNFDYRRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNCL
HRRAYQHKVGNIIETMIAEAFLKADKHIQIEGSEGKMFTLSTAIDDMEAYTKLTDHIFEQ
ILHSSSSELAESRQILRNIICRRLYKCLGQTQADKPMSFTQETIRSWEADLARSIPQNSA
QDVRLQPEDFVVNVIFMDYGMKEKNPINNVRFYCKNDLTTAIQIRKNQVSKLLPDQFAEQ
LIRVYCKKTDDRSLEAAKKHFVQWCMNMNFSKPQDGDIIAPELTPLKASWSNNNEGEDGE
GGSLREGNCASVNGKKKAKMQLSF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaaaacgaccgttaggggaagttaaccctaatgacagcttcaaaacgccg
gagaagcgagtgtcagtggtccggctgctggactcggactacatgcgatggggagtagag
gaaacatgtcgatacctgcgaggagaaggtctcggagaatgggaagatacatttaaagca
caaaaaatcacaggcgtcgggctgcggtatctcaaggatgctgatctggagaagattggc
ataaagtaccttggtgaccgtctgcagatcctacacagcctcaggaagctgtggcagata
gaagcagaggcaaataaggtgtttaatgattccatccacgggcacgtggagttgcatcct
cttctcatcaaaatcatcgacacacctcagttccagagactacgaaacctcaagcagctt
ggagggacctactttgtttttcctggagcctcccacaaccgctttgaacactgcattggg
gtgggtcacttggcagggcgacttgtacaagctctgaacgataggcagccagaactcttc
atctctcgcagagacatcctttgtgtgcagatcgctgggctctgccatgacctgggacat
gggccattttcccatatgtttgacgggaagttcatccccaaagcacgtccgggaatttcc
tggaagcatgagaaagcctctctcgacatgtttgattacctggtaaaagacaatggcctg
aagccggtgatggagcagcacggcctggtgctacccgaggatctggagtttattaaagaa
cagattgctggaccaccggacactaatgcatctcaaggccagaagtggccatataaaggc
cgtccagaagacaagtccttcctctatgaaattgtggccaacagaagaaatggcattgat
gtggacaagtgggactactttgccagggactgctaccacctgggcatccagaacaacttt
gactatcgccgcttcctaaagtttgccagggtgtgtgaggtggacgggcagaagcacatc
tgcactagagacaaggaggtgggtaatctgtatgacatgttccatacaaggaactgtctc
cacagaagagcctaccagcacaaagtgggcaacatcatagaaactatgattgcagaggcc
tttttaaaggcagacaagcacatacagattgaaggctcagaagggaagatgttcactctc
tccacagccatagatgacatggaggcctacaccaagctgacagatcatatttttgagcaa
atactccactcctcctcctcggagttggctgagtcgaggcagattctacgcaacatcatc
tgtcgacgcctctataagtgtctgggccaaacccaggcagacaaacccatgagtttcacc
caggagacgattcgcagctgggaagcagatctggctcgatccattcctcagaacagcgcc
caagatgtccgtctgcagccagaggactttgtagttaatgtcatttttatggactacggg
atgaaggaaaagaaccccatcaacaatgtccgtttctactgtaagaatgacctaaccaca
gccatccagattcggaagaaccaggtgtctaaactcctcccagatcagtttgctgagcag
ctgatcagggtctactgcaagaagactgatgacaggagtctggaggctgccaagaagcac
tttgtccagtggtgcatgaacatgaacttctcaaagcctcaggatggagacataatagca
cctgagctgactcctctaaaagccagctggtctaacaacaatgagggcgaggatggcgaa
gggggtagcctcagggaaggaaactgtgctagtgtcaatggtaaaaaaaaagccaaaatg
cagctttcattttaa
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