Streptomyces lavendulae subsp. lavendulae: SLAV_22515
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Entry
SLAV_22515 CDS
T05314
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Pathway
slx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SLAV_22515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slx03400
]
SLAV_22515 (mfd)
Enzymes [BR:
slx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLAV_22515 (mfd)
DNA repair and recombination proteins [BR:
slx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SLAV_22515 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
4HBT_3
Motif
Other DBs
NCBI-ProteinID:
ATZ26317
UniProt:
A0A2K8PHW0
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All DBs
Position
5049212..5052748
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AA seq
1178 aa
AA seq
DB search
MSLHGLLDAVTRDPALAEAVTAAGDGNRMHVDLVGPAAARPFAIAALAARTQRTVLAVTA
TGREAEDLAAALRSLLPADGVVDYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPSKDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLVPVSLRQGQSTDLGEVTEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDEVRERAAALAEAHPELGELLHKIAEGIAVEGMESLAPVLVDDMELLIDVLPAGAMAV
VCDPERVRTRAADLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIADVRDHARELGMM
WWSVSPFAAEDVDLAGGDTLKLGMRAPEAYRGDTARALADTKGWIADGWHTVYLTEGHGP
AARTVEVLGGEGIAARLEADLPALEPGVVHVSCGSLDNGFVDPALRLAVLTETDLTGQRT
ATKDLGRMPTRRRKSVDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPA
KRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLY
SARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGY
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVKALSRFQSDTES
KATLEGLKEGSVDVVIGTHRLFSQETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVL
TMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQC
FYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVE
SGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLAT
IAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAIEG
GAEEEPALEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEADIKAVREELTDRYGK
LPEPVENLLLVAGLRMLARACGVGDITLQGPNIRFGPVELRESQELRLKRLYPGTVLKPA
TSQVLVPRPKTARVGGKPLVGRELLAWTGEFLTTILGS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggaccccgccctcgccgaggcggtc
acggcggccggggacggcaaccgcatgcacgtggacctcgtcggtccggccgccgcgcgg
cccttcgcgatcgccgcgctggccgcccgtacgcagcggaccgtcctcgcggtcaccgcc
accgggcgggaggccgaggacctggccgccgcgctgcgctcgctgctgccggccgacggg
gtggtggactacccctcctgggagacgctgccgcacgagcgcctcagcccgcgcagcgac
accgtcggccgccgcatcgcggtactgcgccggctcgcgcacccgagcaaggacgacccg
gccgccggtcccgtctcggtggtcgtcgcccccatccgttccgtgctccagccgcaggtc
aaggggctcggggacctggtgcccgtcagcctgcgccagggccagagcaccgacctcggg
gaggtcaccgaggcgctcgcggcggcggcgtacgcgcgcgtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggagcacccg
ctgcgcgtggagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggccccgccctgccgggagctgctg
ctgaccgacgaggtgcgcgagcgggcggcggcgctggccgaggcccacccggaactgggc
gaactgctgcacaagatcgccgaggggatcgcggtcgagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggaactgctgatcgacgtactgcccgccggggccatggccgtg
gtctgcgacccggagcgggtacggacccgggccgccgacctggtggcgacctcccaggag
ttcctgatggcctcctgggccgccaccgcgggcggcggcgaggcccccatcgacgtcggc
gcggcctcgctgcgcggcatcgccgacgtccgcgaccacgcccgagagctcggcatgatg
tggtggtcggtctcccccttcgccgccgaggacgtcgacctggcgggcggcgacaccctc
aagctggggatgcgcgcccccgaggcctaccgcggcgacaccgcccgggcgctcgccgac
accaagggctggatcgccgacggctggcacaccgtctacctcaccgagggccacggcccg
gcggcacgcaccgtggaggtgctgggcggcgagggcatcgcggcccgcctggaggccgac
ctgccggccctggaaccgggcgtcgtgcacgtctcctgcggctccctcgacaacggcttc
gtcgacccggccctgcgcctggccgtcctgaccgagaccgacctcaccgggcagcgcacc
gccaccaaggacctcggccggatgccgacccggcgccgcaagtccgtcgaccccctcacc
ctggaggtcggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatg
gtgcagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgcc
aagcggggccagcccggcgaccgcctctacatccccaccgaccagctggagcaggtcacc
aagtacgtcggcggcgaggcccccaccctgcaccggctcggcggcgccgactggaccaag
accaaggcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctctac
agcgcccgcatggcggcccccggccacaccttcggcccggacaccccctggcagcgcgag
ctggaggacgccttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtc
aaggaggacatggagaagtccgtccccatggaccggctgatctgcggcgacgtcggctac
ggcaagacggagatcgccgtccgcgcggccttcaaggcggtgcaggacggcaagcaggtc
gccgtcctcgtccccaccaccctgctcgtgcagcagcacttcgggaccttctccgagcgc
tacagccagttccccgtcaacgtgaaggcgctgtcccgcttccagtccgacaccgagtcc
aaggccacccttgaggggctgaaggagggctcggtcgacgtcgtcatcggcacccaccgc
ctcttctcgcaggagacgaagttcaaggacctcggcctggtcatcgtcgacgaggagcag
cgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctg
acgatgtccgcgacgccgatcccgcgcaccctggagatggcggtgaccggcatccgcgag
atgtcgaccatcaccaccccgcccgaggagcgccacccggtcctgaccttcgtcggcccg
tacgaggagaagcagatcggcgcggccgtgcgccgcgaactgctgcgcgagggccagtgc
ttctacatccacaaccgggtcgagtccatcgaccgggccgccgccaggctccgcgagatc
gtgcccgaggcgcgcatcgcgaccgcccacgggcagatgtccgaacaggccctggagcag
gtcgtcgtggacttctgggagaagaagttcgacgtgctcgtctcgacgacgatcgtcgag
tccggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggc
ctctcccagctgcaccagctgcgcggccgcgtcgggcgcgggcgcgagcgcgggtacgcg
tacttcctgtacccgccggagaagccgctgacggagaccgcgcacgagcggctcgcgacg
atcgcccagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatc
cgaggcgcgggcaacctgctcggcggcgagcagtccggacacatcgcgggcgtcggcttc
gacctgtacatccggatggtcggcgaggccgtggccgactaccgggccgccatcgagggc
ggggcggaggaggagccggcgctggaggtcaagatcgagctgccggtcgacgcgcacgtc
ccgcacgactacgcgcccggcgagcggctgcgcctgcaggcctaccggtccatcgcctcg
gcgaactcggaggccgacatcaaggcggtgcgcgaggagctcaccgaccgctacggcaag
ctgcccgagccggtggagaacctgctgctggtggcgggactgcggatgctcgcgcgggcc
tgcggggtcggcgacatcaccctccaggggcccaacatccgcttcgggccggtggagttg
cgcgaatcgcaggagctgcggctcaagcggctctacccggggacggtgctcaagcccgcg
acctcgcaggtgctggtgccgcgcccgaagacggcccgggtgggcgggaagccgctggtc
gggcgtgaactcctcgcctggaccggggagttcctcaccacgatcctcggctcctag
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