Solanum lycopersicum (tomato): 101247309
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Entry
101247309 CDS
T02665
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101247309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101247309
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101247309
Spliceosome [BR:
sly03041
]
Complex C
Other components
Step II factors
101247309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_19
AAA_22
zf-C3HC4_2
zf-RING_UBOX
ResIII
zf-C3HC4
Helicase_RecD
AAA_29
ABC_tran
Arc_MA
SLFN-g3_helicase
AAA_30
Motif
Other DBs
NCBI-GeneID:
101247309
NCBI-ProteinID:
XP_004236704
UniProt:
A0A3Q7FZX5
LinkDB
All DBs
Position
4:4509464..4517796
Genome browser
AA seq
1730 aa
AA seq
DB search
MHDSSSYNRRFPAPAMYHQHCYRSSSNRPCRPGFYSSSYELDRPPGHSHKSPNFVIQLRY
GNRRINRYGLDDLIEKLPFAPRSSFVFSKGFLSGSLLYDQWSETLEVIVKLWRMRLSGSH
SFTPWVKRNVEVPSDEDELKGRVKMVFLEELKGLLVEGELLQKWEKKLELLRDEICELSR
LLKNRNNLRVCNEFLKKREGLEKESDLIRKRIEEFKRGIECIIQQLEETSLEEGGSRVFK
IGTEFDWSKIHCLMMRECRRLDDGLPIFAFRQQILRQIHYQQVTVLIGETGSGKSTQLVQ
FLADCGVTGNGSIVCTQPRKLAANSLAQRVKQESEGCYEDNSIICYPSYSSGHKFDSKVV
FMTDHCLLQHYMVDKSLSKISCIIVDEAHERSLDTDLLLALIKNLLLQRLDLRLVIMSAT
ADAAQLADYFFGCGTFHVAGRTFPVDIEYVPCESSGCLGVGPISSYVYDVVKMVTEIHET
EGEGTILAFLTSQIEVEWACVKFQTLSAISLPLHGKLSHEEQHRVFLSYPGKRKVIFTTN
VAETSLTIPGVKYVVDSGMVKESRFEPGTCMSILRICNVSQSSAKQRAGRAGRTGPGRCY
RLYSESDFEGMSHHQEPEIRKVHLGVAVLRILALGIKNVHDFDFVDAPSPKAIEMATRNL
VQLGAVGKKDSAYELTIEGHKIIKLGIEPRLGKLILSCFNQRLSREGVVLAAVMANSSSI
FCRVGSEGDKLKSDCLKVQFCHPNGDLFTLLSVYKEWEAVPKEGKNSWCWDNSINAKSMR
RCQETVQELEACLKSELNIIVASYWHWDPQMHTEHDETLKRIILSSFAENVAMYSGYDQL
GYEVALSKKYIQLHPSCSLLNFDRRPTWVVFGEILSAANEYLVCVTAFEFSSLSALSPSP
LFNFLEMDAQKLEKKVLTGFGSMLLKRFCGKSNSSVNNLVSRIRTKYMDERIGIQVNVGK
NEVLLYASSSDMESVLGQVNGALEYESKLLQNECLEKGLFSGGSAASASVALLGAGAIVK
HLELKKRILAVDIFHSNTKAVDDKELLMFLERNTSSDICAVHKSSGTGHDNEENRWGRVT
FLSPDAAKQAMLLNQVECNGGFLKVVPSRSVFSNDQKQFSSVLRTRVNWPRRCCNGVAIV
KCEPNDVGFMVKDFSVVMIGGNTIRSKPSNKYSDSIVISGLNTDHSETEVLEILSGATDG
KILDFFFVRGSAVENPPVAACEEALRREISPFMPKKAPFVQSIRVQVFQPEPKDTYMRAS
IMFDGSLHLEAAKALEHIDGKVLSGCLPWQKIRCQQQFHSSVSCPAPVYHVIRNQLDSLL
PCLQRRNGVECNLERNENGSFRVKISASATKIVAELRRPLEQLMKGKIVDHVGISPTVVQ
LLFSREGNNIMKMVQQETGTYILFDRHSLSVRIFGSSDKIDMAERKFVNSLLALHESKQL
EVHLRGGLLPLDLMKRVVQSFGPDLSGLKLKVPDAEFSLNTKRHCISVKGTKDMKQKVEE
IISEIAHSGLPSIMMDNETDCPICLCELEDAYRLEGCTHTFCRSCLLEQCESAIRSREGF
PLCCMHKGCGAHILVSDLRSLLSNDKLEELFRASLGAFVAASGGLYRFCPSPDCPSVYHV
TESGEAGAPFICGACYVETCTSCHLEYHPYISCEKYKEFKDNPDFSLEEWAKGKENVKKC
PVCGFTIEKIDGCNHIECKCGKHVCWVCLVFFSSSDDCYNHLRSLHQAIM
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgcatgattcttcctcctacaatcgccggttcccggctccggcgatgtatcaccagcac
tgttatcgatcgtcaagtaacaggccatgtcgtccgggtttttattcttcgagttacgag
cttgatcgaccgccgggacattcgcacaagtcgccgaatttcgtaatccagctgcgttat
ggtaaccggagaatcaaccggtacggattagatgatctaattgagaaattaccgtttgcc
cctcgtagttcgtttgtttttagcaaagggttcctttctgggtcactgttgtatgatcaa
tggagcgaaacgcttgaagtgattgtgaaattatggagaatgaggctttcaggtagtcat
tcgtttactccatgggttaaacgaaacgttgaggttccatctgatgaggatgaattgaaa
ggtagggtaaaaatggtatttttggaggagttgaaagggttgttagtggagggtgaactg
ttacaaaagtgggagaagaagttggaattgttgcgcgatgaaatttgtgaattgtcgaga
ttactgaagaacaggaataatttgagggtgtgtaatgagtttctgaagaaaagggaaggt
cttgagaaggagagtgatttgataaggaagaggatagaggagtttaaaagaggaattgaa
tgtattattcaacagttggaggagacgagtttagaggagggtggttcaagggtgtttaag
attgggacagagtttgattggagtaaaattcattgtttgatgatgagggagtgtcgcagg
cttgatgatggcttgccaattttcgctttccggcagcagatacttaggcaaatacattat
caacaggtgactgtcttaattggtgagactggatcaggaaaaagtacgcaattggttcaa
ttcctagctgattgtggggtaactggtaatgggtctatagtttgcactcagcctcggaaa
cttgctgcgaattctttggcacaaagggtgaaacaggaaagtgaagggtgttacgaagat
aactcgatcatctgctatccgtcatattcatctggtcataagtttgattcaaaagtagta
tttatgacggatcattgccttctacagcactatatggtcgataagagtttgtccaagatt
tcatgtatcatagttgatgaggcacatgaaagaagcctagacactgatctacttttagca
ttgataaagaatcttctccttcagaggcttgatctgaggcttgttattatgtctgccaca
gctgatgcagctcagcttgcggattacttctttggctgcggaacattccatgtggctggt
agaacttttccggttgatattgaatatgttccctgtgaatccagtggatgtcttggtgtt
ggccctatctcctcctatgtgtatgatgttgtcaagatggtgaccgaaatccatgaaact
gagggagagggaacaattctggctttcttgacttctcagattgaagttgagtgggcttgt
gtgaagtttcaaacattgtcagctatttctttacctttacatggcaaactatcccatgaa
gagcagcatagagtttttctcagctatccgggaaagagaaaggtaatattcaccacaaat
gttgctgagacatcattgacaattccaggggttaaatatgttgttgattctggcatggtc
aaagaaagcaggtttgagcctggcacttgcatgagtattctcaggatatgcaatgtcagc
cagagctcagctaagcagcgggctggtcgtgctgggagaactggaccaggaagatgttat
cgactgtactcggaaagtgattttgaaggtatgtctcatcatcaggaacctgaaattcgc
aaggttcatcttggtgttgcagtgctgaggattcttgccttgggcattaagaatgtgcat
gattttgattttgttgacgcacctagccctaaagctattgagatggccaccagaaatctg
gtacagttaggagctgttgggaaaaaagattctgcttatgaattaactatagaagggcac
aaaataattaagttgggtattgaacctcggttaggcaaattgatcctcagttgttttaat
caacgtttgagtagagaaggtgttgttcttgctgctgttatggctaattccagcagcatc
ttttgtagggttggttctgaaggagacaagctaaaatccgattgcttgaaggtgcaattt
tgccatccaaatggtgatctcttcactttactttctgtttacaaggaatgggaggctgtg
cctaaggaaggaaagaattcctggtgttgggataatagcatcaatgccaaatccatgaga
agatgccaggagactgtgcaagaactggaagcatgccttaagagcgaacttaatatcatt
gttgcaagctactggcattgggatcctcagatgcataccgagcatgatgaaactttgaaa
agaataatactttcttcatttgcagagaatgttgctatgtattctggatatgatcaacta
ggttatgaggttgcactcagtaaaaagtacatccaactacatccgtcctgttcgttgtta
aattttgatcgacgaccaacctgggtagtgttcggtgaaatcctttctgcagctaatgag
tatttggtctgtgttactgcatttgagtttagttctctttctgctcttagtccttccccg
ttgtttaattttctggagatggatgcccaaaagctggaaaagaaagttttgacaggtttt
gggagcatgctattgaaaagattctgtggaaaatctaacagtagtgtcaataaccttgtt
tcacgcattagaactaagtatatggatgaaaggattggcattcaagttaatgttggtaag
aatgaggttctgttatatgcttcatccagtgatatggagagtgttttaggtcaagtgaat
ggtgcactagaatatgaaagcaagttgttgcagaatgaatgcttggaaaaaggcctattt
agtggtggatcggctgcatcggcctcagttgcgctccttggagctggtgcaattgttaaa
catttggagcttaagaagagaatcttggctgttgacatatttcattcaaatacaaaagca
gttgatgataaggaactgctgatgtttttggagagaaacacatctagtgatatttgtgca
gtgcacaagtcctcaggtactggccacgacaatgaggagaacagatggggcagggtaaca
tttctttcccctgatgctgctaaacaagctatgttgttgaatcaggtagaatgtaatggt
ggctttctaaaagttgttccttcgaggagtgtatttagtaatgatcaaaagcaattctcc
tctgtcctcagaactagagtaaattggcctcgtagatgctgtaatggtgtagctattgta
aaatgtgagccaaatgatgttggctttatggtaaaagatttctctgtcgtaatgataggt
ggaaacaccatccgttcaaagccaagcaataagtactctgacagcatagtaatatcagga
cttaatacggatcattctgagacagaggtactcgagattttgagtggagctacagatggg
aaaattctggattttttctttgtgagaggaagtgctgtggaaaatcctccagttgcagct
tgtgaagaagcacttaggagagaaatctcccccttcatgcctaaaaaagcaccttttgtc
cagtctattcgtgttcaggtcttccaaccagaaccaaaggatacttacatgcgagcgtct
atcatgtttgatggaagtcttcatcttgaagcagctaaggctttggagcatattgatggc
aaggttttatctggatgtcttccctggcagaagataagatgtcagcaacagttccacagc
tctgtttcctgtcctgcacctgtttaccatgttattaggaaccagctggattctctactc
ccatgcctccagcgaagaaatggtgtggagtgcaatctggagagaaatgagaatggttct
tttagggttaaaatatctgcaagtgctacaaagattgtggcagaactgagaaggccattg
gagcaactgatgaaaggcaagattgtggatcatgtgggaatttctccaactgttgttcaa
cttctattttctagggaagggaataatatcatgaagatggttcagcaagaaacaggaacc
tatattctttttgacaggcatagcctttctgtgagaatctttggttcctccgacaagatt
gatatggctgagcggaagtttgttaactcccttctggcactacatgaaagcaagcaactt
gaagtgcatcttcgtggaggacttttgcctcttgacctgatgaaaagagttgttcagagt
tttggaccagatcttagtggtctcaaactaaaggtgcccgatgcagaattctctctgaac
acaaagcgtcattgcatctctgtcaaaggtaccaaagacatgaagcaaaaagttgaggag
ataatttccgaaattgctcacagtggtcttccaagtataatgatggacaatgagacggac
tgccccatttgcttgtgtgaactggaggatgcttacagacttgaaggttgtacccacacc
ttctgtcggtcgtgcttgctggagcagtgcgagtctgcaatcagaagccgggaaggtttc
cctctatgctgtatgcataaaggttgtggggcacatattctggtttctgatttgaggtct
ctgttgtcgaatgataagttggaggaacttttcagggcttctttaggggcatttgtagca
gcaagtgggggtctctaccggttttgcccctcccctgactgcccttcagtttatcatgtt
actgaatcaggagaagctggtgcaccttttatctgtggcgcatgctatgtggagacgtgt
acgagttgccacctggagtatcacccctacatctcatgcgagaagtacaaggagttcaag
gacaacccggatttctctctagaggaatgggccaaggggaaagagaatgtgaagaaatgt
cctgtttgcgggttcacgatagagaagatagatggctgcaatcatatcgagtgcaagtgt
ggaaaacatgtttgctgggtttgtttggtattcttcagcagcagcgacgattgctataac
catctgaggtctcttcaccaggccattatgtga
DBGET
integrated database retrieval system
