KEGG   Solanum lycopersicum (tomato): 101251648
Entry
101251648         CDS       T02665                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03082  ATP-dependent chromatin remodeling
sly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101251648
   03083 Polycomb repressive complex
    101251648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sly03036]
    101251648
Enzymes [BR:sly01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101251648
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101251648
   HDAC complexes
    Sin3A-HDAC complex
     101251648
    BRAF-HDAC complex
     101251648
    REST complex
     101251648
    SHIP complex
     101251648
    MiDAC complex
     101251648
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101251648
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101251648
  Chromatin remodeling factors
   NuRD complex
    101251648
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 101251648
NCBI-ProteinID: XP_004251031
LinkDB
Position
11:53082763..53090532
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
HDNDNHTDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgaggtccaaggacaaaatctcctacttctacgacggtgatgtaggaagcgtatacttt
ggaccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagcta
gcgcagtttcattctgctgattatgtagagttcttgaatagaataaccccagatactcag
aacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtgggacaatagatgctgcacgtagattg
aataataagctttgtgatattgcaataaattgggctggtggcttgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctg
aagtatcatccgcgggtgctctatattgatattgatgtgcatcatggtgatggtgtagaa
gaggccttttatttcactgacagggtaatgactgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctcaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctctattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccactgctggtaactggaggtgggggatac
acaaaagagaatgtcgcccgttgttgggctctggaaactggagttcttttagacacagaa
cttcctaatgaaataccagacaatgattacatcaaatattttgcccctgattattcgctg
aagcttcctggtggacacatagagaacctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatctccgttgcctccagcatgctccgagcgtacagatgcaagag
gtaccacctgacttttatattcctgattttgatgaagatgaacaaaatccagatgagcgc
gtgaatcaacatacccaagataagcatatccaacgtgacgatgagtattatgaaggcgac
catgacaacgataaccacactgatgatgcctaa

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