Solanum lycopersicum (tomato): 101251648
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Entry
101251648 CDS
T02665
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
sly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101251648
03083 Polycomb repressive complex
101251648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
101251648
Enzymes [BR:
sly01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
101251648
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
101251648
HDAC complexes
Sin3A-HDAC complex
101251648
BRAF-HDAC complex
101251648
REST complex
101251648
SHIP complex
101251648
MiDAC complex
101251648
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
101251648
Heterochromatin formation proteins
Other heterochromatin formation proteins
101251648
Chromatin remodeling factors
NuRD complex
101251648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
101251648
NCBI-ProteinID:
XP_004251031
LinkDB
All DBs
Position
11:53082763..53090532
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
HDNDNHTDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccaaggacaaaatctcctacttctacgacggtgatgtaggaagcgtatacttt
ggaccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagcta
gcgcagtttcattctgctgattatgtagagttcttgaatagaataaccccagatactcag
aacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtgggacaatagatgctgcacgtagattg
aataataagctttgtgatattgcaataaattgggctggtggcttgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctg
aagtatcatccgcgggtgctctatattgatattgatgtgcatcatggtgatggtgtagaa
gaggccttttatttcactgacagggtaatgactgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctcaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctctattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccactgctggtaactggaggtgggggatac
acaaaagagaatgtcgcccgttgttgggctctggaaactggagttcttttagacacagaa
cttcctaatgaaataccagacaatgattacatcaaatattttgcccctgattattcgctg
aagcttcctggtggacacatagagaacctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatctccgttgcctccagcatgctccgagcgtacagatgcaagag
gtaccacctgacttttatattcctgattttgatgaagatgaacaaaatccagatgagcgc
gtgaatcaacatacccaagataagcatatccaacgtgacgatgagtattatgaaggcgac
catgacaacgataaccacactgatgatgcctaa
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