Solanum lycopersicum (tomato): 101252266
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Entry
101252266 CDS
T02665
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101252266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101252266
03019 Messenger RNA biogenesis [BR:
sly03019
]
101252266
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101252266
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101252266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
101252266
NCBI-ProteinID:
XP_004253131
UniProt:
A0A3Q7JY75
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All DBs
Position
12:65684176..65692686
Genome browser
AA seq
975 aa
AA seq
DB search
MALAGGYANSKLIQNDAAVAPPKPLSSSVIERYKSALKEREIEIRASMQGGDDDVIVLPP
SMNEIVRLYEMLLSELAFNSKPIITDLTIIAGEQREHGEGIAHAICNRILEVPVEQKLPA
LYLLDSVVKNIGKDYIKHFSAHLPEVFCEAYRQVHPSMHPAMRHLFGTWSTVFPAPVLQK
IETRLQFSQPGVQQSSGLTSSRASESPRPAHGIHVNPKYLEARRQLGHSTIDSVRAENST
GHISSDLEAKQVLSTSSKNARSSSPYRVGPPRSLSPTLNEFALDNPAIGLRERASPSHTA
LDYGFSRVRGRDVERSEWQRILPDGANQQPDVPPKYRINKGIDLQGPRALIDAYGIDERE
KVAHLRQQKTGNATINGLGNGLAVKTWQNTEEEEFNWEDMSPTLADQSPFNDLSASLRHP
QSIRMRPCVDSQHAGPLVADPRRNWANRGQYSLVHDSSVDDVHSSGRGARNKITGYCDET
SLISGSHYLQKLPENVPQLPLRHLKGEGSGISSVTGESKHPLIGNLAADGHTWRPPYVPP
RMNPTFDSSVQDVRVVTGRGPGVPWPPQNVHTPHSLTSKPVVLPHNHVRSPYEVNNASNS
VVNHTLDRPVLPEQHIDNLKSSSHIKFPQFPSQHPTSFSTSHQNSEQMASAEPQLLLSQR
IHQTMPPSASLPASNHLLPPTYRYPLPGPGSSIGPHFPRPVSGPQVSMPLVNVPNTSSQF
SSGALPPFPRGPLPMPSKFMPASQNPGQVTPNPPAAGFSSLINSLMAQGLISLTNQAPAQ
DPVGLDFNPDLLKVRHDSAVTALYADLPRQCTTCGLRFKCQEAHSSHMDWHVTKNRVSKN
RKQKSSRKWFVSVNMWLSGTEALGSDAVPGFLPTEQVVETKDDEELAVPADDEQNACALC
GEPFDDFYSDETEEWMYRGAVYMNAPSGSTVGMERSQLGPIIHAKCRSESSAPHEDSRKV
DEGPEDESQRKRMRS
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggctttagccggcggctatgcaaattctaagttaatccaaaacgacgctgccgtggcg
ccaccaaaacctttgtcatcttctgtaatcgaacgatataagtcggcgttgaaggagagg
gaaatagaaattagggcttctatgcagggaggtgatgatgatgttatcgtgttgcctccg
tctatgaatgagattgttaggctttatgaaatgttgttgtcggaactggcttttaattct
aagcctatcattactgaccttaccatcattgctggcgaacagagagaacatggtgaaggc
attgctcatgcgatttgtaatcggattttagaggtcccagttgagcagaaactacctgca
ttataccttctggatagtgttgtaaaaaatattggcaaggactacatcaagcatttctct
gcccatttacctgaggttttctgtgaggcatataggcaagtgcaccctagcatgcatcct
gcaatgcgccacctctttgggacatggtcaactgtgttcccagcacctgttctccagaaa
attgaaactcgtcttcagttttcacagccgggggtccaacaatcttctggcttgacttcg
tcaagagcatctgaatcaccgcgaccagctcatggcattcatgtaaatccaaaatatttg
gaagcaaggcgtcagcttgggcactccactattgattcagtaagagctgaaaattctaca
ggtcatatatcttcagatctggaagccaagcaagttctgtctacatcttcaaagaatgcg
agatcatcctctccttatagagtggggcctccgaggtcattgtcacccaccctcaacgag
tttgccttggataatcctgccataggactcagagaaagggcctcaccgtctcatactgca
cttgactatgggtttagcagagtaagaggtagagatgttgagaggagtgagtggcagaga
attttgcctgatggggccaatcagcaaccagacgttcctcctaaatatcgcataaacaag
ggaattgatcttcaaggacctagagctttgattgatgcttatggaattgatgaaagggaa
aaagtagcccatctgaggcagcaaaagactgggaatgccactattaatggcttaggcaat
gggttagcagttaagacatggcaaaataccgaagaggaagagtttaactgggaagatatg
agtccaactttagcagatcagagcccgtttaatgatttgtcagcatctcttcgccatcct
cagagtatcaggatgagaccttgtgttgattcacaacatgctgggccattggtggctgat
cctagaaggaactgggctaatcgagggcaatattctttagttcatgattcttccgtggat
gatgttcactcgtctggtcgaggggcgagaaataaaattactggatattgcgatgagaca
tctctgatttcaggttcacattatcttcaaaagcttccagaaaatgtgccacagttgcct
ctaagacatttaaagggtgaaggaagtggaatctcatcagtgaccggtgaatcaaagcac
cctttgattggcaatttggctgctgatggacatacttggaggccaccatatgttccgcca
agaatgaatcctacttttgactcttcagttcaggatgttcgggtggttactggacggggc
cctggtgtaccatggcctccccaaaatgtgcatactccccattctttgacttcaaaacct
gttgttctgcctcataatcacgtcagaagtccttatgaagtaaataatgcaagcaattca
gttgtcaatcatactttggacaggccagttcttcctgagcaacatattgataatttgaag
agcagctcacatatcaagtttccacaatttcctagtcaacaccccacatcattttctaca
agtcatcaaaattctgaacaaatggcttcagcagaacctcagctattgctttctcagcgt
attcatcagactatgcctccaagtgcctcacttccagcctcaaaccatttgctaccacca
acttatagataccctctaccgggtcctggttcttctataggtcctcacttcccccgtcca
gtttcaggtccacaagtgtctatgccattggttaatgtcccaaatacgtcatcacagttt
tcctcaggagctttaccaccttttcccagaggcccacttcctatgccatctaaattcatg
ccagcatcccaaaatccaggtcaggttactcctaaccctccagcagcaggcttttcaagc
ttgattaactcactcatggcacaaggtttgatttcattgacaaatcaagctcccgctcag
gatcctgtgggccttgattttaatccggatcttctgaaggttcgtcacgattctgcagta
actgctttatatgctgatcttccaagacagtgcacaacttgtggcctacgatttaaatgc
caagaggctcacagtagtcatatggattggcatgtaaccaagaatcgagtatcgaaaaat
cgcaagcagaagtcttctcgtaagtggtttgtaagcgtcaacatgtggcttagtggtaca
gaggcgttgggatctgatgcagttcctggatttctaccgactgagcaagttgtcgaaacg
aaggatgatgaagaattggccgtcccagctgacgatgagcagaatgcttgtgcactgtgt
ggagagccttttgatgatttttacagcgatgagactgaagaatggatgtataggggggct
gtctacatgaatgcaccaagtgggtcaacagttggaatggaaaggtctcagttgggtcca
attattcatgcgaaatgcagatctgaatctagtgctccacatgaggactccagaaaagtg
gatgagggtccagaagatgaaagtcaaaggaaacgaatgcggagttag
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