Solanum lycopersicum (tomato): 101254752
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Entry
101254752 CDS
T02665
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101254752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101254752
03009 Ribosome biogenesis [BR:
sly03009
]
101254752
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101254752
Spliceosome [BR:
sly03041
]
Complex A
U1 snRNP components
U1 related factors
101254752
Complex B
101254752
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101254752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101254752
NCBI-ProteinID:
XP_004232309
LinkDB
All DBs
Position
2:complement(49944354..49954461)
Genome browser
AA seq
706 aa
AA seq
DB search
MAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYEKPVATPHVGAA
QHKSSVSVSSSVERPSQSQCSDHGDNRGTNGALSKLSSGEGIQTARANELSRDETSAPKG
YSASAAASDISPDAYRRQHEISVSGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQ
AQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQ
IQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQV
SYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNI
GNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTH
PFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIED
YVHRIGRTGRAGATGEAYTFFVDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGRA
RRQWDSGSGGREGGHGGRYDAGYGGRDGARGGWEAPSSERSGRVYDSDSRDRDRHGHGSD
APASFHGRSFHETMMQGSQRRDRSRSRSPNRGSGWGDRKGRERSRSRSAERSERTRIQVP
VGGSFHEAMMGFTRSSAGDSRKDWEKERSQGDGKSGDGPRANNWEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacc
cttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaat
ccagagaccaatactacccaatacgagaagcctgttgctactcctcatgtgggtgctgca
caacataaatcctctgtatctgtaagttcatcagttgagaggccttctcaaagtcaatgt
tctgaccatggtgacaacagaggtaccaatggtgccttgagcaaactttcctctggagag
ggtattcagactgcaagagcaaatgagctttcccgcgatgaaacatctgcgcctaaaggt
tatagtgcttcagctgccgcgagtgacatatctccagatgcctatcgccgtcagcatgaa
atttctgtctcaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggttt
ccttcagagattttgagggagatacatcaagctgggtttcctgctccttccccaatacag
gcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactggg
tctggaaaaactctaggtttcttgcttcctggctttattcttctaaagcaacgtcggagt
aatcctcaatcaggccctactattttggttctctcgccaacaagagaattagccacacag
atacaagatgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatat
ggaggcgccccaaaaggccctcagctacgagatctggataggggagttgatattgttgtt
gctacccctggtcgattgaatgatattttggagatgagaagagttaggctggatcaagtt
tcttacttggtgttagatgaagcggatcgtatgctggacatgggattcgaacctcagata
aggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatgg
cctaaggaggtccgtagaattgcagctgatctattggttaatccagttcaggttaacatt
gggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtca
tatatggataaacaaaagcgtctagaccagatcttgagatcccaagagcctggatcaaaa
atcattatcttctgttcaactaagaaaatgtgtgaccaacttgctcgcaatcttacacac
ccatttggagctgctgctattcatggtgataaatctcagggtgagagggatcatgtactg
agccagttccgcactggcaagtcccccgttcttgttgcaactgatgttgctgctcggggc
ttggatgtcaaagatatcagggtggtggtcaactatgattttccaactggtatagaggac
tatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattt
tttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaat
cagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggct
aggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgat
gctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaaga
agtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgat
gctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagaga
cgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggc
agggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttcca
gtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcc
cgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgt
gctaacaattgggaggagtaa
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