Solanum lycopersicum (tomato): 101257555
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Entry
101257555 CDS
T02665
Name
(RefSeq) uncharacterized protein LOC101257555 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101257555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sly03000
]
101257555
03019 Messenger RNA biogenesis [BR:
sly03019
]
101257555
04121 Ubiquitin system [BR:
sly04121
]
101257555
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101257555
Transcription factors [BR:
sly03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101257555
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101257555
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101257555
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101257555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-UDP
Baculo_IE-1
Nup35_RRM_2
FYVE
zf-TFIIIC
Motif
Other DBs
NCBI-GeneID:
101257555
NCBI-ProteinID:
XP_004236820
LinkDB
All DBs
Position
4:2930178..2938442
Genome browser
AA seq
867 aa
AA seq
DB search
MSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACRTTY
EKEKVVRMQTNIERAGNNNANRKSKQQPKAKPKTNEAKKDLTNVRVIQRKMAYVIGLPLS
LADEDLLQRKEYFGQYGKVTKISLSRTTGGAIQQFVNDTCSVYITYSKEEEAVRCIQFVH
GFVLEDRYLRASFGTAKYCHAWLRNTPCSNPSCLYLHSIGADEDSFGKDDVAAIHTRNRV
QQIAGDASNMMNRSGNVLPPPIDELSSTGFTLTETSSIRNAASDASNDTVNYSSYMAHVV
PHDKDGDAGGPNRMTTFVDIVGRYNTSGAESDGNSTEDCRILNLSSDLSSVTISKDNHRH
EKYPDKTLFKVPSSNHIVNHPRGNLNFVEFSDEPYREDYTSFDSQGLKDPNNMDQKAFLM
PSCSTQSTENSGSRLLVPTPCSLSSNGMDYGALHNQVDEASLPHSCVNAILNEGLHDLKF
QSSVKSDRVYRSSTSFSNEEIVEHLRRIDGDNLTNYQDSSFNAIESSVISNIMSKDLNSC
DDSMALRRSFVGSYGESVGKHGASWNSLHSDQLGFSFVKQDDFSWQGGDLESSFRNIGQI
SKNSSILQDFGENKDQYVNKAPYQITRPKVSAPPGFSMPPRDLPHGFASSDDIGGMPRSL
SGSRLVNSSSSLLHTPSTGSISSAGDIDFVDPATSVFGNGKPTNGFDISALEIGSACVPQ
RRGFEDEARIWHLMQQKPLDQGKFSQRIASQTPSMHQSRRHPSHGGDEYLGLDDIYGFSS
RMVDQHQSFNSSSYSQFPQQKLATNDHIFNGFQHNSLDDIHRGNEVDNMTQHQSNDSLGF
KKFYAGYGDVMFQTPRSGDVYTRVFGM
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagat
cagcagtttaagccttgcaaatgtggttatcaggtgtgtctttggtgttggcatcacata
atggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatac
gaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgcc
aataggaaaagcaaacaacaaccaaaggcaaagccaaaaactaatgaagccaagaaggat
ctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaagt
cttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttacc
aaaatttctctctctaggacaactggtggtgccatccagcaatttgttaatgatacttgt
agtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcagtttgtacat
ggttttgtcttggaagatagatatttgagagcatcatttgggactgcaaaatactgccat
gcgtggttgagaaacacgccttgcagtaatccgtcttgtctatatttgcatagcattggt
gctgatgaagatagctttggcaaagatgacgtagctgcgattcatacaaggaatagagtt
caacaaatagctggtgacgccagtaatatgatgaatcgttcaggaaatgtcttgccacct
ccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaat
gctgcaagtgatgcatcaaatgatacagtgaattacagtagctacatggctcatgtagtt
cctcatgataaggatggagacgctggtggaccaaacagaatgacaacgtttgttgatatt
gttggacggtacaatacttctggtgcagagagcgatggaaatagcacggaagattgtagg
attttgaatttatcttctgacctatcttcagtaaccattagtaaagataatcatagacat
gaaaaatatcctgataaaactttgttcaaggttccatcttcaaatcacattgtcaatcat
ccgcgaggcaacctaaattttgttgaattttcagatgaaccttacagggaagattataca
tcttttgacagtcaaggactgaaggatccaaataacatggatcaaaaggcttttcttatg
ccatcttgttctactcaatccacagagaactctggtagtcgtttattagtacctacgcca
tgtagtctgagtagcaatggaatggattatggagctttacataatcaagtggatgaagct
tctctgccacattcatgtgtaaatgcgatattaaatgaaggacttcatgacttgaagttc
caaagttctgtcaaatctgatagggtttacagaagttctacctcattttccaatgaagaa
atagtggagcacctacggaggattgatggtgataacttgacgaactatcaagattcttca
ttcaatgccatagaaagcagtgttatttcaaatattatgtcaaaggacttgaattcatgt
gatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaag
catggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaa
gatgacttttcctggcaaggaggtgatttggagtcgtcttttagaaatattggtcagata
tcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaag
gctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgccccca
agggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctt
tctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagc
attagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggc
aaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacag
aggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagat
caagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaagg
catcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatca
aggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcag
aagcttgcgacaaatgaccacatctttaatggcttccagcacaatagcttggacgatatc
catcgtggtaatgaagtggacaacatgacacaacaccagtcaaatgattcattaggtttc
aaaaaattctatgctggatatggagatgtgatgttccagacgccccggtctggcgatgta
tacaccagagtatttgggatgtaa
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