Solanum lycopersicum (tomato): 101264766
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Entry
101264766 CDS
T02665
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101264766
03015 mRNA surveillance pathway
101264766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101264766
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101264766
mRNA cycle factors
P-body specific factors
101264766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
101264766
NCBI-ProteinID:
XP_025888962
LinkDB
All DBs
Position
1:91904583..91916944
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AA seq
485 aa
AA seq
DB search
MKGPLDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPQHWSKKDGREGTILKDPEYLE
FLEFISKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSIANG
RPTRRASGTSAGSPSSSASKRSSEKRRASTTMYVLRDSSKAGSGKDKTYILAPKRDDQQR
AEKSGTSAPGSVANAVEEETGGAADVGKKKILLLKEKEKENPNNQRREASGRIIRSILLK
DARQNQAPSASQQEKHRVDKDKKPPRPPSVQLFQRETNGANEDRVLGADLHVVHTEKQEK
RTRIRDRPDRGVWTPLRRSDSLHASDESLSSSASQSSEVPDFVEGSPGETKHGLVNARVA
EFRPMGSGRNSHSSFDNGTYKHGGRRGMRDDGISVGEGKPLRRGGPSSYNTHEKQVWVQK
SSSGT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttct
cagtccatgcttcttgaccaagttgattcccgattcgctggtcgatacaactggttctgt
tttctacccggcaagtccagtcagaagcatcaaacttattcaagagcctatattgaattt
aagaggccagaagatgttatcgagtttgcggagttctttgatggacacgtttttgtaaac
gagaaaggcactcagttcaaaactattgttgagtatgctccttcacagcgtgttccacaa
cactggtccaagaaggatggccgtgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttatctcaaaacctattgagaatcttccgagtgcagaaatacagttggaa
agaaaggaagctgaacgcgcgggttctgcaaaggatgctcctatagttactcctttgatg
gattacatacgtcagaaaagagccgccaagagtggagctcggaaatctatagctaatgga
agaccaaccagaagagcgagtggcacatccgcaggaagtcctagctcaagtgcgtctaaa
cgaagctctgaaaagagacgggcttccactaccatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaacatatattctagctccaaaacgtgatgatcagcagcgt
gctgagaagtctggtacctctgctcctggatctgtggctaatgcagttgaagaggaaact
ggtggagctgccgatgttgggaagaagaaaatcctgctcttgaaggaaaaggaaaaagaa
aatcctaataaccagcgtcgtgaggcaagtggaagaatcattagaagtattcttctcaag
gatgctcgtcaaaatcaggccccatctgcatcccaacaagaaaaacacagggtggataag
gacaaaaagcctcctaggccaccaagtgtccagttgtttcagagagaaactaatggagct
aatgaagatagggttcttggagctgatttgcatgttgtccacactgagaaacaggaaaaa
cgcactaggatcagggataggccggatcgtggtgtttggactcctcttcgtcgttctgat
agtttacatgctagtgatgaatctttatcttcatctgcctctcaatcttccgaagtgcca
gattttgttgaaggaagtccaggtgaaaccaaacatggtctggtaaatgctcgtgttgcg
gagttcagacccatgggaagtggacgtaattctcattcttcttttgataatggtacttat
aaacatggtggtcgtcgtggtatgagggacgatggaatttcagtaggggaaggaaagccc
ttaagaaggggaggtccttctagctataatacccatgagaaacaagtgtgggtccaaaag
tcaagttctggtacttag
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