Solanum lycopersicum (tomato): 101266429
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Entry
101266429 CDS
T02665
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101266429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101266429
Enzymes [BR:
sly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101266429
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101266429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
101266429
NCBI-ProteinID:
XP_004242917
LinkDB
All DBs
Position
7:8728393..8782031
Genome browser
AA seq
1172 aa
AA seq
DB search
MATSAVDGGGNSSVGGEDIKFSVMVSLFKWIQKSKSSVKKRSKFRKFMDTFCRKPQDNFV
AMRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNF
SLVAAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRKTNAQEMKWII
MIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR
PQLALRVSNVSAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMS
DVITQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILY
VGDTSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNAHRLSGEPCWSIIAHSVDDVD
KFFKGTVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPDYVRPGSDLDVLIIGGYYGSGRH
GGEVAQFLVGLAEPPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAP
PTFYQVTNNSKERPDVWVESPEKSIIVSITSDIRTTRTEVFAAPYSLRFPRIDKVRYDKP
WHECLDVQSFVDLVHSTNGTTQREDNYGVEQDHESKTIRSSRKREKKNVFAVPSHFVQTD
VSRIKGETSMFSDMVFYFANVPSSHTLESLHKMVVEHGGAFSMNLNKSVTHCIAAESRGI
KFQAAKLHGDVIQCSWLFDCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFFSDI
SIEEIKLLLRNIEHPEDSKTVEYYKKKYCPKDEWARFHGCCIYFFIPKQCLEYSDCKVLV
ELAMKRMKVEISVGGGKVGDNLFHATHVVVMSLPEIDVKFNEVLNSFSEAEKHVLYNTKL
HVVGARWLEDSLKEDQKLLEESYSLKPSNFQMSISEKSRHDKQKGDSEKCKRPSSLDKHG
GQIKAKGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINIPRTVKRKVTSSRAKIHE
NESDESATSCEHLRNDEGEAAVGSYETTAVRSSGVQNEDVQDLELSEDGKTLPPGTAECS
VINERLDKAHETSYGSGNIARGKDKVDEKLEDPVDPVQAMLLHMIPHLDSKPTRSIDTLV
KDDKPDADTNPSPKKKKKISYKDVAGELLKDW
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagacggtggtggtaatagtagtgttggcggagaagacataaaa
tttagtgtaatggttagcctttttaagtggatacagaagagtaaatcatcagtgaagaag
cggtccaagttccggaagtttatggataccttctgcaggaagcctcaggacaatttcgtt
gccatgcgccttattctccctggcctcgaccgtgagcgtggctcttatggccttaaggag
cacgtcctcgctacttgcctcattgacgcacttgcaatgtcccgcgattccgatgatgca
cgccgtctccttaactggcggaaaggcggtcccaaaactggctctaatgccggcaacttc
tctcttgttgccgctgaggtcctccagcgcagacagggaatggcttctgctgggctaaca
attaaggaactaaatgacttccttgatcacttggcctcaagtgaaaatagagcagagaag
acttcaattctgtctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattata
atgataatcctcaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattc
catccagatgcagaggacttattcaatgtcacatgcgatctaaaattagtttgtgaaaag
ttgagggacagaagtcaacgacataaacgccaggatattgaagttggaaaacctgtccgc
cctcagctggctcttagggtcagcaatgtatctgctgcatggaaaaagctttacgggaaa
gaagtagttgttgagtgcaaatttgatggggatcgcatccagattcacaaaaataattct
gagctaaacttcttttcaagaaactttctggatcatcaagagtatgctcatgggatgtca
gatgttattactcagaatatcctcgctgacaagtgcatactcgatggtgaaatgttggtt
tgggatgcatcaataaaccgctttgcagagttcggttccaatcaagaaatagcaaaggca
gcaagagagggtcttgatagtgataggcagttgtgttatgttgcgttcgatattctttat
gttggggataccagtgttattcatcggagcttgaaggaacgtcaagagattctccagaaa
gttgtgaagcccataaaaggccgtttagaaattttggtccctaatggcggtcttaatgct
catcgtctttctggggagccctgttggtcgatcattgctcatagtgttgacgatgtcgat
aaattctttaaaggaactgttgagaatagagacgaaggaatagttttgaaagatttaact
tcaaaatgggaaccaagtgatcggagtggaaaatggctaaagttgaagcctgattatgtt
cgacctggctctgatttggatgttcttattatcggaggctactatggttctgggcgacat
ggaggagaggtagctcaatttctggtgggtcttgctgagcctccggctccaaatacatat
cccagaaggttcatttctttttgcagagtaggcactggagtttctgatgaggaacgcaat
accatagtaactcgattaaaaccttatttcaggaagtatgagtacccgaagcaggcacca
ccaaccttttatcaagtaacaaataattcaaaagagcgacccgacgtgtgggttgaaagt
ccagagaaatccatcattgtttcaattacaagtgatattagaacaacaagaactgaggtg
tttgctgctccatacagcttgagatttccgcgtattgataaagtcagatatgacaagcct
tggcatgagtgtcttgatgtgcaatcatttgttgatctggtacattcaaccaatggtacc
acgcagagggaggacaattatggggttgagcaggatcatgaatcaaagaccattaggtcg
tcaagaaaacgagagaagaagaatgtctttgcagttccttctcattttgttcagactgac
gtgtctcgaattaagggtgaaacatcaatgttctctgacatggtgttttattttgctaat
gtgccttcatcacatacactagaatccttgcataaaatggttgttgagcatgggggtgct
ttctccatgaatttgaataagtcagttactcattgtatagcagctgaaagtagaggtatc
aagtttcaagctgcaaaacttcatggagatgttattcaatgctcttggctctttgactgc
tgtctgcaaaagaagctccttcctttacagccaaagtattttcttttcctttctgattca
acaaagaaaaagatggaagcagaagtggatgaatattctgattctttcttctccgacatc
agcattgaagaaattaaactgcttttgagaaatatagaacacccagaagactccaaaact
gtcgagtactacaagaaaaagtactgtcccaaggatgaatgggctcggtttcatggttgc
tgcatttattttttcataccaaagcagtgtctggaatattcagattgcaaggttttagtg
gaacttgctatgaagaggatgaaagttgaaatttctgttggtggtgggaaagttggtgac
aatctttttcatgccacccatgtcgtcgtcatgtctctaccagagatcgatgtaaagttc
aatgaagtgttaaatagtttctcagaggctgagaaacatgttttgtacaatacaaagctg
catgtagtcggagcacggtggttggaggattcccttaaagaggaccagaagttgcttgag
gagagttatagccttaagcctagcaattttcaaatgtcaatctctgagaagagtaggcat
gataagcaaaaaggtgattctgaaaagtgcaaaagaccatcttcccttgataaacatgga
ggacaaatcaaagcaaaaggaatttcagaccagggccgagctatcacactaccaaagagg
ggcaggaaacgagatagaggaagacctactggtagtgctacagcaaaagggaaagtgggg
atcaacattccacgtacagttaaacgcaaggtcacaagtagtcgtgctaagattcatgaa
aatgaatctgatgaaagtgctacttcatgtgagcatcttcgtaatgacgagggtgaagcg
gctgttgggagctatgaaactactgcagtacgtagctcaggagttcagaatgaggatgta
caggatctggaattgtcagaagatggtaaaacacttccaccagggactgctgaatgcagt
gtgatcaatgaaagattggacaaagctcacgaaacttcatatggaagtggaaatattgcc
aggggcaaagacaaggtggatgaaaagctggaagaccctgttgatccagtccaagctatg
ctattgcatatgataccccacttggatagtaagccaacaagaagcatagacactcttgta
aaagacgacaagccagatgcagatactaatcccagtcctaaaaagaaaaagaaaattagc
tataaagatgtagctggtgagttgctcaaagattggtga
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