Solanum lycopersicum (tomato): 101267083
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Entry
101267083 CDS
T02665
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101267083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101267083
Spliceosome [BR:
sly03041
]
Complex A
U1 snRNP components
U1 related factors
101267083
Complex B
101267083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
101267083
NCBI-ProteinID:
XP_004250825
LinkDB
All DBs
Position
11:33151776..33172874
Genome browser
AA seq
1044 aa
AA seq
DB search
MANNSQFTGMQPPIPPLAGPPQGSIPSMSLQFQPMLPPQQAQPYVSGSSQHFQPLGHANV
VMPPQPPQIQFPQPMQQVAGRPVVGGHNMSQGPPNPHDFQRNPPMSNNHMTGSGGPGFPL
SSSYNQVNADSSSSQYQTQIHDHRFPSGVQPWMPTSNQNVNSATTMQNTGELAAPLVVPE
ANNGVDSVETTPSDWIEHTSRNGKKYYYNRRTRISSWEKPLELMTEMERADASTDWREFT
SPAGRKYYYNKVTRKSNWKMPDEVKLAREKHTDSHASDFGSISSVKTSSPGADGSFVSAQ
GAMTSPIAVSPVANLPTIVASESSLSGKLSSPTVDAVEMQNSSEPASPAVANSEKIGITV
TLGNSVVIPARSETTSAQDEVACDDGASPDNREEVKHVAAITGIGSAAPSEEKTVELGPL
VYESKVEAKNAFRTLLESANIGSDCTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSQR
KKLEAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKVISIFEHDERFKAVERAKDREDL
FEDYKEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCPRLE
KIDRLEIFQEYIRDLEREEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAVGMLNAKTIW
RDYCIKIKDIAAYQAVSSNTSGSSAKDLFADVVDELDKQYLDDKSRIRDAVRMTEIGLTS
TWTLDDFKDAIAKYISSPPISDTNLKLVFEELLERAREREEKEAKKRKRLADEFYELLHA
SKEITASSKWEDCKSLFGDRITGDESLLLEIFDKFVNELKEKAKEKDRKRQEDKARKEKE
RKDREKKKEKHRRDKHRGDKSRKERERSKRDSSDSDKEIRRSGSDRDKRDSDKEIKRSGD
KKIKRSDSDKEIKRSDSDKEIKRPGSERDKRDSDKEIKRPGSERDKKDSDKEIKRSGSDR
DRKHRKRHRHSSDDDDSEKDHSRSSYRRGSDYKKVKQMDLHRRSLEADSEGKRKKRKRDH
RSDSHRESDDEDHKDWESGDDVEV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggctaataattctcaattcactggcatgcagcctcctatacctcctctggctggtcct
cctcagggttctattccatccatgtcactgcagttccagcctatgcttccaccccagcag
gcacaaccatatgtttctggttcatctcaacactttcagccacttggacatgcaaatgtt
gtgatgcctcctcaacccccacaaatccaatttcctcagcctatgcaacaggttgctggt
agacctgtagtaggagggcataatatgtctcagggaccacctaatccccatgattttcag
cgaaaccctccgatgtcaaataaccacatgactggttctggtggcccaggttttccgcta
tcttcttcatataatcaggtaaatgctgattcatcaagctcccagtatcagacacagata
catgatcataggtttccatcaggggtacaaccctggatgccaacaagtaatcagaatgtg
aattctgcgacaactatgcaaaatactggagaactagcagctccgttggttgttccggaa
gcaaataatggggttgactctgttgagactactccgtcagattggattgagcatacttct
cgaaatgggaaaaaatactattataatagaaggacaagaatctctagctgggagaaacct
ctagagctgatgacagaaatggagagggcagatgcatcaactgactggagagaatttaca
agtcctgcgggaagaaagtattactacaacaaggttactagaaagtcaaattggaaaatg
cctgatgaagtcaagttggctcgtgaaaagcacactgattcgcacgcctctgattttgga
tccatttctagtgttaaaacatcatccccgggtgcagatggctcatttgtctcggcacaa
ggagctatgacaagcccaattgctgtgtcaccagttgctaacttaccaactatcgtggct
tcagaatcaagtttatctggtaagctttcttctccgacggttgacgcagtcgaaatgcag
aactcttcagaacctgcttcgccagctgttgctaattcagagaaaattggaataacagta
accttgggaaattctgtcgtgataccagctcgttctgagactacttcagctcaagatgaa
gtagcgtgtgatgatggagcttcaccggacaatagggaggaagttaagcatgttgctgca
ataactggaataggaagtgctgctccatcagaagagaaaacagtcgagctgggaccatta
gtttatgagagcaaagtggaggcaaagaatgcattcagaactcttttggaatctgctaat
attgggtctgactgcacatgggatcaggccatgagagcaataatcaatgatcgaagatat
ggtgctctaaaatcccttggtgagcggaagcaagctttcaatgagtatctgagccaaagg
aaaaaactggaagctgaagagagacgtgttaaacagaaaaaagctcgggaagatttcagg
ataatgttagaagattgcaaggagctgtcaccatcctcaagatggagtaaggtaatttct
atattcgaacatgatgaacgttttaaagctgttgagcgagctaaagaccgtgaggacctt
tttgaagattataaggaggaacttgagaaaaaggagcgtgcaagggcattggaggagcag
aagcgcaatagagtggagtatttagaattcttaaaatcctgtgactttattaaggccagt
agccagtggcggaaagttcaggaccgcttagaagctgatgaaagatgcccccgccttgag
aaaattgaccgcttggagattttccaggaatatatacgtgatttagagagggaagaggag
gagcaaaggaaactgcggatggaagaattgaggaaagctgaacgtaaaaatcgtgatgaa
ttccgaaaactgatggaagagcatgttgctgtgggaatgcttaatgcaaaaactatctgg
cgtgattattgcatcaaaatcaaagatatagctgcatatcaggctgtctcatcaaatact
tcagggtcatcagcaaaagacttatttgcagatgtcgtggatgagctagataaacagtat
cttgatgacaagtcacgaattagagatgcagttaggatgaccgagattgggctgacatca
acctggacgcttgacgattttaaggatgcaatagcaaagtatattagctctccaccaata
tcagatacaaacttaaagcttgtctttgaagagttactggaaagggccagggagagagaa
gaaaaagaagctaaaaagcgtaaacgtctagcagatgagttctatgaacttcttcatgct
tcaaaggaaattactgcatcgtcaaaatgggaggactgcaagtccctctttggagatagg
ataacgggtgacgagagcttgctgctagaaatatttgacaaatttgttaatgagctaaaa
gaaaaggcaaaagagaaggaccggaagcgtcaagaggataaggcaagaaaagagaaggaa
aggaaagatagagaaaagaagaaggaaaaacatagaagggataaacacagaggggataag
agcaggaaagagagagaaagaagcaagagagatagttcagacagtgacaaggaaatcaga
aggtcaggaagtgacagagataagagagacagtgacaaggagattaaaaggtcaggagat
aagaagatcaaaaggtcagacagtgacaaggagatcaaaaggtcagacagtgacaaagag
atcaaaaggccaggaagtgaaagagataagagagacagtgacaaggagatcaaaaggcca
ggaagtgaaagagataagaaagacagtgacaaggagatcaaaagatcaggaagtgacaga
gataggaaacatcgcaagcggcatagacattcctctgatgacgatgacagcgagaaagat
cattcaagaagttcttacagacgtggaagtgattataagaaagtgaaacagatggaccta
cacagacggagtttggaagctgattcagagggcaagcgcaaaaaaagaaaacgagatcat
cggagtgattctcatagggaaagtgacgatgaagatcacaaagactgggaatccggcgat
gatgtagaagtttag
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integrated database retrieval system
