Sulfurovum mangrovi: LN246_11205
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Entry
LN246_11205 CDS
T09512
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN246_11205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smab03400
]
LN246_11205 (mfd)
Enzymes [BR:
smab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN246_11205 (mfd)
DNA repair and recombination proteins [BR:
smab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LN246_11205 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UFH58903
LinkDB
All DBs
Position
complement(2188002..2190992)
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AA seq
996 aa
AA seq
DB search
MYQSNIYEYLEKLSEEKLLICKDDKEAIQVRDVANLLGFESYLLPDIRVSAGEDLRTYDE
EIHTLFITLAAYHQSGHKKVLISPFRTLLIPFPKPEYFGNHTIEFGDTLDLTALKERLYH
WGYHFTDIAASSGEVSFRGDIIDIFPIDADQPYRIGLFDEEVETIQHYDEATQKRILPKE
GEDELDHVTFSPTFLALDQAEYEGLKSRVESSSYDTFVKDIDSLGLWHLEALGESALEQF
SPVLTSNLDEELDEIYELDQPLIPRDSFDLSIIAESKKYRDLEVADPNKLLESHQDKKIT
ILAKNESIVRGSELSSFEGIEFVYQEGIVNLMGPDRLILSLNKPLKRKKVKKATIVLDEL
KPGDYVVHENHGVGIFKGIEKRDVLGAVSEFVVMHYQNEDSLLIPVSSLEVIDRFVADSG
TLPVLDRLGKTSFKKLKGKVKEKLFAIASQIINLSAQRHLKRGIVLKTNLEEHAIFMAKA
GFVHTEDQERAIHEMLEDLGSGRMMDRLLSADVGFGKTEVAMNGMYVAAKNGYQSMMIAP
TTLLSAQHYKSLKERFREEEIKVAKLDRFSTAKQKREVLAGLEDGSIDVVVGTHALLKAK
FKNLALVVIDEEHKFGVKQKEALKEISIDVHLLSMSATPIPRSLNMAMSQVKTFSEILTP
PVERQGVRTFVKSYDEKVIKEAILRERRRGGQIFYVFNSIAAIEDKKKELLDILPDLRIA
VLHSKVSAKETEEEMMKFEEGEYDLLLSTSIVESGIHMPHANTMIVDGADNFGIADLHQL
RGRVGRASKEGYAYFVVTDKERLTEQAKRRLLALESHSDLGSGAVLAFHDLEIRGGGNII
GEAQSGHIKQIGYSLYLRMLEDAIKELSGQDKEVTQHVDMKLNVDAYLNEELIEEDRLRL
ELYRRLSQCESTGEVYEISAEIEDRFGKLDTVTKQFIDVIVMKVLARVRGISKVSSYGEN
VFIEFTEEGKDRVVLKSPSKDDDDIIATAMGYLKGL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagagtaatatctacgaatatttagaaaagcttagtgaagagaaacttcttatc
tgtaaggatgataaagaggcgatccaggtacgggatgtggcaaatctgcttggatttgag
agttatctgctgccggatatccgtgtaagtgcaggggaggatcttcgtacctatgatgag
gagatacatacactttttatcaccctggcagcgtatcatcaaagcgggcataaaaaagta
ctgatctctccatttcgtacccttctgatcccttttcccaaaccggaatattttggaaac
catacgatagagtttggtgatacccttgatcttactgcactcaaagagagactctatcac
tgggggtatcattttacggatatcgcagcaagcagcggtgaggtctctttccgcggtgat
atcatcgatattttcccgatcgatgccgatcagccttatcgtatcggactttttgatgaa
gaggtagagacgatacagcactatgatgaggcgacacagaaacgtatcctgcctaaagag
ggagaggacgagcttgatcatgtcacgttctcgcctactttcctggcactggaccaggca
gagtacgaggggctcaaaagcagggtggagtcgagtagctatgatacctttgtcaaagat
atcgattcacttggattgtggcatctggaggcgcttggggagagtgcactggagcagttc
agccctgttttgacctcaaatctggatgaggaactggatgagatctatgagttggatcaa
cctctgatccccagagactcctttgatctctcaatcattgccgagagtaagaagtatcgc
gaccttgaggtggccgatcccaataaactcctagagtcacaccaggataaaaagatcacg
atcctggctaaaaacgaatcgatcgttcgcggaagcgaactgtctagttttgaggggata
gagtttgtctatcaagagggtattgtcaacctgatggggccggacaggctgatcctttca
ctcaacaaaccgctcaaacgtaaaaaggtcaaaaaggcaacgatcgttcttgatgaactt
aaaccgggtgactatgtcgtacatgagaaccatggggtgggtatcttcaaagggatagag
aagcgtgacgtgctgggggcagtcagcgagtttgtcgtgatgcattaccaaaatgaggat
tcgcttttgatcccggtgagttccctggaggtgatcgaccgttttgtcgccgacagcggt
acacttcccgtacttgacaggctcgggaaaacgagtttcaaaaagctcaaagggaaggtt
aaagagaaactttttgctatcgcttcacagatcatcaatctctccgcacagcgtcatcta
aaaagagggatcgtccttaaaacaaatctggaagagcatgcgatctttatggcgaaagcg
ggctttgtccacaccgaagaccaggagcgtgcgatccatgagatgctggaggatcttggg
agcgggcgcatgatggacaggctgttgagtgccgatgtagggttcggtaagacagaagta
gcgatgaacgggatgtatgtggcagccaaaaacggttaccagtcgatgatgatcgcaccg
accacgctgctgagtgcacagcactataaatcactcaaagagcgtttcagagaggaggag
ataaaggtagcaaagctggaccgtttctctacagccaaacagaaacgcgaagtgcttgcc
ggacttgaagacggatcgatagatgtggtagtcgggacccatgcactgctcaaggcgaag
tttaaaaatctggcactggtggtgatcgatgaagaacataagttcggtgtgaaacagaaa
gaggcactcaaagagatcagtatcgatgtgcatctcctctcgatgtcagcgaccccgatc
ccaagaagtctcaatatggcgatgtcacaggtgaagactttctcggagatccttacccct
ccggttgagcgtcagggtgtacgtacgtttgtaaagagttatgatgagaaggtgatcaaa
gaggcgatcctgcgtgagcgtcgccgcggtggtcagatcttttatgtctttaactcgatc
gcagcaattgaggataagaagaaagagcttctggatatccttcctgatctgcgtatcgct
gtactgcactccaaagtctctgccaaagagacggaagaggagatgatgaagtttgaagag
ggggagtatgatctgctcctctccacttcgatcgtcgaatcggggatccatatgccgcat
gccaacacgatgatcgtggatggtgcggacaacttcggtatcgcagacctgcaccagctg
cgcggacgtgtcggaagagcttccaaagaggggtatgcctattttgttgtcacagataaa
gagcgtttgaccgaacaggcaaaacgaagactgcttgcactggagtcgcattccgatctt
ggcagcggtgcagtattggccttccatgatcttgagatccgaggagggggaaatatcatc
ggagaagcacagtccggtcatatcaagcagatcggatactcactctatctgcgtatgctg
gaagatgcgatcaaagaactgagcggccaggataaagaggtgacgcaacatgtcgatatg
aagctcaatgtcgatgcctacctgaatgaagagctcatcgaagaggacagactccgtctt
gagctctaccgccgtctttcacaatgtgagagtaccggagaggtctatgagatcagcgct
gagatcgaagacaggttcggcaagcttgacacagtgaccaagcagttcatcgatgtgatc
gtgatgaaggtacttgcacgcgtgagaggtatctcaaaagtctcttcttatggtgagaat
gtctttatagaatttacagaagaggggaaagatagggtggtactgaagtctcctagtaag
gacgatgatgatattatcgcaactgcgatgggatacctgaaaggtttgtaa
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