Serratia marcescens subsp. marcescens Db11: SMDB11_1274
Help
Entry
SMDB11_1274 CDS
T03985
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMDB11_1274 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smac03400
]
SMDB11_1274 (mfd)
Enzymes [BR:
smac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMDB11_1274 (mfd)
DNA repair and recombination proteins [BR:
smac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMDB11_1274 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDG11850
LinkDB
All DBs
Position
complement(1335314..1338787)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHPGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISDRLSSLYHLPTMARGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKSAWPAGIEYWQPLFFSQPLPSLFSYLPGNTLIVNTGDLEGAA
ERFWQDVNQRYESRRVDPMRPLLAPDTLWLRVDALFGELKAWPRIALKTDELPAKAGNTN
LDYHTLPDLAVQAQHKSPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLAPALI
QRLDQAETAGRYMMVGAAEHGFLDGLRRRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHNREQYQL
FCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAAEGKVDIIIGTHK
LLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMGTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPTLL
PEDFIPDVNTRLSLYKRIASAKNDGELDELKVELIDRFGQLPDAARNLLQCAALRLHAQR
LGIKRIESNERGGFIEFGDNNRVDPGYLIGLLQGNPQVYRLDGPSKLKFTLDLADRQKRL
TFTEELLNAFREHTLAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcttcatcccctcgttattctctgcccgatcgc
gcgggcgatctgcgccaactggggcaactgaccggcgcggcctgtgccgtggaatgcgcc
gagatcgtagaacgccaccctggcccggtgatgctgatcgcgccggatatgcaaaacgcc
ctgcggctgcgcgacgagatccagcagttcactgaccagatggtgaccacgctgtccgac
tgggaaaccctgccgtacgacagcttctcgccgcaccaggaaatcatctcagatcgtttg
tcgagcctgtatcacctgccgaccatggcgcgtggtgtgatcattctgccggtcaacacc
ctgatgcagcgcgtctgcccgcacgaattcctgcacggccacgcgctggtgatgaagaaa
ggccagcgcctgtcgcgcgacaagctgcgcgcgcagttggaacaggccggctaccgcagc
gtcgatcaggtgatggagcacggtgaattcgccacccgcggcgcgctgctcgatctttac
ccgatgggcagcgatgagccttaccgcatcgactttttcgatgacgaaatcgacagtctg
cgtatcttcgacgtcgatacccagcgtacgctgagcgaagtcgaggccatcaatctgttg
ccggcccacgagttccccaccgacaagaacgccatcgagctgttccgcagccagtggcgc
gagcagtttgaggtgcgtcgcgacgccgaacacatctatcagcaggtcagcaaaagcgcc
tggcccgccggtatcgaatactggcagccgctgttcttcagccagccgctgccgtcgctg
ttcagctacctgccaggcaatacgctgatcgtcaacaccggcgatctggagggcgccgcc
gagcgcttctggcaggacgtcaaccagcgttacgaaagccgccgcgtcgatccgatgcgc
ccgctgctggcgccggatacgctgtggctgcgcgtcgacgcactgttcggcgagctgaag
gcctggccgcgcatcgcgctgaaaaccgatgagctgccggccaaggccggcaataccaat
ctggactaccataccctgcccgatctggcggtgcaggcgcagcataaatccccgctggat
aatctgcggcgctttatcgaaggcttcgacggcagcgtgattttctccgtcgagagcgag
gggcggcgtgaaacgctgcaggatctgctcggccgcatcaagctggcgccggcgctgatt
cagcgcctcgatcaggcggaaacggcgggccgttacatgatggtcggcgccgccgaacac
ggcttcctcgacggcttgcgccggcgggcgctgatctgcgaaagcgatctgctcggcgag
cgcgtcagccgccgccggcaggacaaccggcgcaccatcaacaccgataccctgatccgc
aacctggcggagctgcatcccggccagccggtggtgcacctggaacacggcgtcggccgc
tacgtcggcctgaccacgctggaggccggcggcatcaaggccgagtacctgatcctctcc
tacgccggtgaggacaagctgtacgtgccggtgtcatcgctgcatctgatcagccgctac
gccggcggcgcggacgaaaacgccccgctgcacaaactgggcggcgacgcctggacgcgc
gcgcggcagaaagccgccgagcgggtgcgcgacgtggcggccgagctgctggatatttac
gcccagcgcgccgccaaggccggtttcgccttcaaacacaaccgcgagcagtaccagctg
ttctgccagagcttcccgttcgaaaccacgccggatcaggaacaggcgatcaacgcggtg
ctgagcgacatgtgccagccgctggcgatggaccgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgacgacgctgctggcgcagcagcacttcgacaacttccgcgatcgc
ttcgccacctggccgatccgcatcgagatgatgtcgcgcttccgcagcgccaaagagcag
caacaggtgctggacgacgcggccgaaggcaaagtggacatcatcatcggcacccacaaa
ctgctgcagagcgatctgcgctggaaggatttggggttgctgatcgtcgatgaagagcac
cgctttggcgtgcgccacaaggagcgcatcaaggcgatgcgcgccgatgtcgatatcctg
acgctgaccgccacgccaatcccgcggacgctgaacatggcgatgagcggcatgcgcgat
ctgtcgatcatcgccactccgccggcgcgccgcttggcggtgaagaccttcgtgcgcgaa
tacgacagcctggtggtgcgcgaggcgatcctgcgcgaagtgctgcgcggcggccaggtt
tactacctttacaacgacgtggaaaacatcgagaaagcggcgcagcgcctggctgaactg
gtgcctgaagcgcgcatcgccatcggccacggccagatgcgtgaacgcgatctggagcgg
gtgatgaacgatttccaccaccagcgcttcaacgtgctggtgtgcaccaccatcatcgaa
accggcatcgatatccccagcgccaacaccatcatcatcgagcgggccgatcgcttcggc
ctggcgcagctgcatcaattacgcggccgcgtcgggcgttcgcaccaccaggcttacgcc
tatctgctgacgccaaacccgaaagccatgggcaccgacgcccataaacggctcgaggcc
atcgcgtcgctggaagatctcggcgccgggttcgcgctggcaacccacgatctggagatc
cgcggcgccggtgagctgctgggtgaagaccagagcggccaaatgaccaccgtcggtttc
tcgctctatatggaactgctggaaagcgccgtcgacgcgttgaaaaacggtcgcgaaccg
tcgttggaagatctcaccagcagccagaccgaggtagaactgcgcatgccgacgctgctg
ccggaagacttcattcccgacgtcaatacccgtctgtcactgtataagcgtatcgccagc
gcgaagaacgacggtgagcttgacgagttgaaggtcgaactgatcgaccgcttcggccag
ctgccggatgcggcgcgcaacctgttgcaatgcgcggcgctgcgcctgcatgcgcagagg
ctggggatcaaacgcatcgagagcaacgagcgcggcggctttatcgagttcggcgacaac
aaccgcgttgacccgggttatctgatcggcctgttgcagggcaatccgcaggtttaccgc
ctggacggcccgagtaagctgaagttcacgctcgatctggccgatcgccagaaacgcctg
acgttcaccgaagagctgctgaacgccttccgcgaacacacgctggcggcctaa
DBGET
integrated database retrieval system
