Serratia marcescens subsp. marcescens Db11: SMDB11_1563
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Entry
SMDB11_1563 CDS
T03985
Symbol
fecI
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SMDB11_1563 (fecI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smac03021
]
SMDB11_1563 (fecI)
Transcription machinery [BR:
smac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SMDB11_1563 (fecI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_7
HTH_Tnp_4
HTH_24
HTH_28
HTH_31
HTH_38
TnsD
Xre-like-HTH
HTH_IclR
DUF3080
GerE
HTH_36
HTH_11
DUF1118
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
CDG12136
LinkDB
All DBs
Position
complement(1629257..1629781)
Genome browser
AA seq
174 aa
AA seq
DB search
MSATASAPHTALSRLYATHHAWLQGWLRRRLGCAFDADDVAQDTFMRLLKSDAAATLREP
KDFLVTVAKRVMVDLFRRRTLERAYLEMLALIPEGYAPSPEQRQSLLESLQQIDAMLDGL
GPKVKQAFLLSQLEGLGYADIAARLGVSVSSVKKYMAKATEHCLLFSLENDVYS
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaccgcttccgccccgcacaccgcgctgtcgcgcctttacgccacccatcat
gcctggttgcagggatggttgcgcaggcggctgggctgcgcgttcgacgcggacgatgtg
gcgcaggacaccttcatgcgcctgctgaaaagcgacgccgcggcgaccctgcgcgagccg
aaagattttctggtcaccgtcgccaagcgggtgatggtcgatctgttccgccgcagaacg
ctggaacgcgcctatctggagatgctggcgctgatcccggaaggctacgccccgtcgccg
gagcagcgccagagcctgctggaaagcctgcagcagatcgacgccatgctcgatggcctg
gggccgaaggtaaaacaggcctttctgttgtcgcagctcgaaggtctgggctatgcggac
atcgccgcgcgcctcggcgtgtcggtcagttcggttaaaaaatacatggccaaagccacc
gagcattgcctgctgttcagcctcgaaaacgacgtttattcatga
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