Sphingopyxis macrogoltabida EY-1: AN936_21285
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Entry
AN936_21285 CDS
T04104
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smag
Sphingopyxis macrogoltabida EY-1
Pathway
smag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AN936_21285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smag03400
]
AN936_21285
Enzymes [BR:
smag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AN936_21285
DNA repair and recombination proteins [BR:
smag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AN936_21285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALH82802
UniProt:
A0A0N9UH36
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All DBs
Position
4517402..4519918
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AA seq
838 aa
AA seq
DB search
MARADPLARYNAKRDFKLTPEPAGKVEKGAGNRFIVQKHDATRLHYDFRLEIDGVLKSWA
VTKGPSADPADKRLAVRTEDHPMSYADFEGVIPKGEYGGGTVMLWDRGTWAPIAGKSAKD
IEKGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVDDAFAGGADDLVGRQLTSVL
TDRTMADIAADKGGEQSLQGAKGAAFAKKMAAATAHNKQVAKPVAKPKARGKPPKFRPLQ
LATLVDAVPGGNGWFHEIKYDGYRAEIAAAGSDVRVFTRNGLDWTDKFAPLVRHIAALDL
PPCLIDGEIVAYGKDGNPDFSALQAVLKRGHGEQGEDNDLSFFAFDLLEESGKSLAKLGN
LERKERLEALLRHAQPPIAVADHVIGAGETLYAAMCGAGQEGIISKRADAAYSGRRSKNW
VKVKCTRRQEFILVGWNPSSAKGRAFASLLLAQREKGKLVYKGNVGTGFDAATMADLAKK
FAARERKTAPLDVDATVARKVHWLKPDLVAEIAFAEFTAGGSVRHASFLGLRRDKEAKEV
TPEKQQPAPEPASDVTISSRDRVIFPEAKATKGDLADYYAAIAPVMLPHMARRPISLVRC
PQGRAKKCFFQKHDSGSFGDHVHHIPIREKDGGHEDYLYVDDADGILACVQMGTIEFHGW
GSHVDALEKPDRMVFDLDPDEGLAFADVKKAAADIRRQLADIGLVSFAMLSGGKGVHVVV
PLDPGHDWDAHKDFSKRFAEALSLAEPDRYVATMSKAKRKGKIFIDYLRNQRGSTAIMPY
SARAREGAPVAVPVGWDALADIESAGAWTIKDAAALLERAGSAELKGWGFASQKLPAL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgccgatccccttgcccgatataatgccaagcgcgacttcaagctgaccccc
gaaccggcagggaaggtcgaaaagggagccggcaaccgcttcatcgtccagaagcatgac
gcgacgcggctccactatgatttccgcctcgaaatcgacggtgtgctcaaaagctgggcg
gtcaccaaaggcccgagcgccgatccggccgacaagcgcctcgcggtgcgcaccgaagac
catccgatgagctatgccgatttcgaaggcgtgatccccaagggcgaatatggcggcggc
acggtgatgctgtgggatcgcggcacctgggcgcccatcgcgggcaagagcgccaaggat
atcgaaaagggtcatctccatttcaccctcgacggcgaacggatgaagggcgaatggctg
ctcgtccgcatgaagccgcgcccgggcgagaagcgcgagaactggctgctgcgcaaggtc
gacgatgcttttgccgggggtgccgacgacctggtggggcgtcagctcaccagcgtcctc
accgaccggacgatggccgacattgccgccgacaagggcggcgagcagtcgctgcagggc
gcgaagggcgcggctttcgcgaagaagatggccgccgccacggcacataacaaacaggtc
gccaaacccgtcgccaaaccgaaggcacgcggcaagccgccgaaattccgcccgctccag
ctcgcgacgctcgttgacgcggtgcccggcggcaacggctggttccacgagatcaaatat
gacggctatcgcgccgaaatcgctgcggcaggctccgacgtccgagtcttcacgcgcaac
ggcctcgactggaccgacaagttcgccccgctcgtccgccacatcgcggcgctcgatctg
ccgccgtgcctgatcgatggagagatcgtcgcttatggcaaggacggcaatcccgacttc
tcggccttgcaggcggtgctgaaacgcggtcacggcgaacagggtgaggataatgacctt
agtttttttgccttcgacctgctcgaagaaagcggcaaatcgcttgccaaactcggcaat
ctcgaacgcaaggaacggctcgaagcgctactccgccacgcgcagcccccgatcgcggtc
gccgatcatgtcatcggcgccggcgagacgctctatgccgcgatgtgcggcgccgggcag
gagggcatcatctcgaagcgcgccgacgccgcttattcgggccgccgctcgaaaaactgg
gtgaaggtcaaatgtacccgccgtcaggagttcatcctcgtcggctggaacccgtcatcg
gccaagggccgcgcctttgcctcgctcctcctcgcccagcgcgagaaaggcaagctcgtc
tacaagggcaatgtcggcaccggtttcgacgccgcgacgatggccgacctcgcgaagaaa
tttgcggcgcgcgaacgcaagacggcgccgctcgacgtcgatgcgacggtcgcgcgcaag
gtccattggctgaagcccgatctggtcgccgaaatcgcctttgccgaattcacggcgggc
ggctcggtgcgccatgccagttttctcggcctgcgccgcgacaaggaggcgaaagaggtg
acccccgaaaagcagcagccggcgcccgaaccggcgagcgacgtgacgatcagcagccgc
gaccgcgtgatctttcccgaggccaaggcgaccaagggcgatctcgcggactattacgcc
gcgatcgcaccggtgatgctgccgcacatggcgcgccgcccgatcagcctcgtccgctgc
ccgcaggggcgcgcgaaaaaatgcttcttccagaaacacgacagcggttcgttcggcgac
catgtccaccacatcccgatccgcgagaaggacggcgggcacgaggattatctttatgtc
gacgacgccgacggcattcttgcctgcgtccagatggggacgatcgagttccacggctgg
ggcagccatgtcgacgcgctcgaaaagcccgaccgcatggttttcgacctcgaccccgac
gaagggctcgcgttcgccgatgtgaaaaaggcggccgccgacatccgccgccagctcgcc
gatatcggcctcgtcagcttcgcgatgctctcgggcggcaagggggtgcatgtcgtcgtg
ccgctcgatccggggcatgactgggacgcgcacaaggatttctcgaaacgctttgccgaa
gcgctgagcctcgccgagcccgaccgctatgtcgcgacgatgagcaaggcgaagcgcaag
ggcaagatcttcatcgattacctccgcaaccagcgcggcagcaccgcgatcatgccttac
tcggcccgcgcccgcgagggcgcgccggtcgcggtgccggtcggctgggatgcgctcgcc
gatatcgaaagcgccggggcgtggacgatcaaggatgccgccgcactgctcgaacgcgcg
ggcagcgccgaactcaagggctgggggtttgcgagccagaaactgccggcgctgtag
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