Solibaculum mannosilyticum: C12CBH8_16480
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Entry
C12CBH8_16480 CDS
T07247
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C12CBH8_16480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sman03400
]
C12CBH8_16480
Enzymes [BR:
sman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C12CBH8_16480
DNA repair and recombination proteins [BR:
sman03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C12CBH8_16480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
BCI61009
UniProt:
A0A7I8D6A2
LinkDB
All DBs
Position
complement(1788466..1789419)
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AA seq
317 aa
AA seq
DB search
MESLFDRKNLHPMLIAENTAPFDHPGYLYEVKWDGERCIAYLDPKGKTTELRNKRNMILN
PKVPELWQLHRQVKKKCILDGELLVLVDGKPNFYEIQRRSLMGNRFRLELAAKKHPATFV
AFDCLWADGQDLMFQPLMERKRILKQAVKENERIAVSRYFEGKGAALYELAKQQQLEGIV
AKRKESIYIQGKRTKDWVKIKNLQDEDFVVCGYIQKDNHMTSLVLGQYAETGGLVYKGHV
TLGVGGAPFHKILEQPQASGPPLEVPQGHGNEDAVWIGPSMVCTVSYMEKTANGGMRQPV
FKGLREDKTTEECIETR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgctttttgaccgcaaaaacttgcatcccatgctgattgcagaaaatacagcc
ccctttgaccatcccggttatctttatgaagtgaagtgggatggggaacgctgcattgcc
tatttggacccgaaagggaaaaccacggagctccgcaacaaacggaacatgatcctgaat
ccaaaggtaccggaactatggcagctgcaccggcaggtcaaaaagaaatgcatcctggat
ggggagctgctggtactggtagatgggaaaccaaatttctatgaaatccagcgccgtagc
ctgatgggcaaccggttccgtctggaactggcggccaagaaacacccggccacctttgtg
gcctttgattgcctttgggcggatgggcaggatttgatgttccaacctctcatggagcga
aaacggatcttaaaacaagcagtcaaggagaacgaaaggattgcggtatcccggtatttt
gaaggtaagggtgctgcgctgtacgagctggccaagcaacaacagttggaaggcattgtt
gctaaaaggaaagaaagcatctacatccagggcaaacggaccaaggactgggtaaagatc
aaaaacctccaggacgaggactttgtggtatgcggctacatccagaaggacaaccacatg
accagcctggtgctggggcaatacgcagaaacgggagggctggtttacaaaggccatgtg
acccttggcgtagggggagcgccctttcataagattttggaacagccacaggcgtctggc
ccgccccttgaggttccccaagggcatggaaacgaagatgctgtgtggattgggccctcc
atggtatgcaccgtcagctatatggagaagacggcaaatggcgggatgcggcagccggtc
tttaaggggctgagggaggacaaaaccacggaagaatgcatagagacaagataa
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