Serratia marcescens SM39: SM39_1474
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Entry
SM39_1474 CDS
T03592
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SM39_1474 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_1474 (mfd)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SM39_1474 (mfd)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SM39_1474 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAO33517
LinkDB
All DBs
Position
complement(1499127..1502600)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHPGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISDRLSSLYHLPTMARGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKSAWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGDLEGAA
ERFWQDVNQRYESRRVDPMRPLLAPDTLWLRVDALFGELKDWPCIALKTDELPAKAGNTN
LDYHALPDLAVQAQHKSPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLAPALI
QRLDQTETAGRYMMVGAAEHGFLDGLRRRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHNREQYQL
FCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAAEGKVDIIIGTHK
LLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMGTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPALL
PEDFIPDVNTRLSLYKRIASAKSDGELDELKVELIDRFGQLPDAARNLLQCAALRLHAQK
LGIKRIESNERGGFIEFGDNNRVDPGYLIGLLQGNPQVYRLDGPSKLKFTLDLADRQKRL
TFTEELLDAFREHTLAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcctcatcccctcgttattctctgcccgatcgc
gcaggcgatctgcgccagctggggcaactgaccggcgcggcctgcgccgtggagtgcgcc
gagatcgtcgaacgccaccctggcccggtgatgctgatcgcgccggacatgcaaaacgcc
ctgcggctgcgcgacgagatccagcagttcaccgaccagatggtgaccacgctgtccgac
tgggaaaccctgccgtatgacagcttctcgccgcatcaggaaatcatctcggatcgtttg
tcgagcctgtatcatctgccgaccatggcgcgcggcgtgatcattttgccggtcaatacc
ctgatgcagcgcgtctgcccgcacgagttcctgcacggccacgcgctggtgatgaagaaa
ggccagcgcctgtcgcgcgacaagctgcgcgcgcagctggaacaggccggctatcgcagc
gtcgatcaggtgatggaacacggcgaattcgccacccgcggcgcgctgctcgatctttac
ccgatgggcagcgatgagccttaccgcatcgactttttcgatgacgaaatcgacagcctg
cgcatcttcgacgtcgatacccagcgcacgctgagcgaagtcgaggccatcaatctgttg
ccggcccacgagttccccaccgacaagaacgccatcgagctgttccgcagccagtggcgc
gagcagttcgaggtgcgccgcgacgccgagcacatctatcagcaggtcagcaaaagcgcc
tggccggccggcatcgaatactggcaaccgctgttcttcagccagccgctgccgtcgctg
ttcagctacctgccggccaacacgctgatcgtcaataccggcgatctggagggcgccgcc
gagcgcttctggcaagacgtcaaccagcgttacgaaagccgccgcgtcgatccgatgcgc
ccgctgctggcgccggatacgctgtggctgcgcgtcgacgcgctgttcggcgagctgaag
gactggccgtgcatcgcgctgaaaaccgatgagctgccggccaaggccggcaataccaat
ctggactaccatgccctgcccgatctggcggtgcaggcgcagcataaatccccgctggat
aacctgcggcgctttatcgaaggcttcgacggcagcgtgattttctccgtcgagagcgag
gggcggcgtgaaacgctgcaggatctgctcggccgcatcaagctggcgccggcgctgatt
caacgcctcgatcagacggaaacggcgggccgttacatgatggtcggcgccgcggaacac
ggcttcctcgacggcctgcgccggcgggcgctgatctgcgaaagcgatctgctcggcgag
cgcgtcagccgccgccggcaggacaaccggcgcaccatcaacaccgataccctgatccgc
aacctggcggagctgcatcccggccagccggtggtgcacctggagcacggcgtcggccgc
tacgtcggcctgaccacgctggaggccggcggcatcaaggccgaatacctgatcctctcc
tacgccggtgaggacaagctgtacgtgccggtttcttcgctgcatctgatcagccgctac
gccggcggcgcggacgaaaacgcgccgctgcacaaactgggcggcgacgcctggacgcgc
gcgcggcagaaagcggccgagcgggtgcgcgacgtggcggcggagctgctggatatctac
gcccagcgcgccgccaaggctggtttcgccttcaaacacaaccgcgaacagtatcagctg
ttctgccagagcttcccgttcgaaaccacgccggatcaggaacaggcgatcaatgccgta
ttgagcgacatgtgtcagccgttggcgatggatcgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgaccaccctgctggcgcagcaacacttcgacaacttccgcgatcgc
ttcgccacctggccgatccgcatcgagatgatgtcgcgcttccgcagcgccaaagagcag
cagcaggtgctggacgacgcggcagaaggcaaggtggatatcatcatcggcacccacaag
ctgttgcagagcgatctgcgctggaaagacctggggctgctgatcgtcgatgaagagcac
cgcttcggcgtgcgccataaggagcgcatcaaggcgatgcgcgccgacgtcgatatcctg
acgctgaccgccacgccgatcccgcgcaccctgaacatggcgatgagcggcatgcgcgat
ctgtcgatcatcgccaccccgccggcgcgccgcttggcggtgaagaccttcgtgcgcgaa
tacgacagcctggtggtgcgcgaggcgatcctgcgcgaagtgctgcgcggcggccaggtt
tactacctctacaacgacgtggaaaacatcgagaaagcggcgcagcgcctggcggagctg
gtgccggaagcgcgcatcgccatcggccacggccagatgcgcgagcgcgatctggagcgg
gtgatgaacgatttccaccaccagcgcttcaacgtgctggtgtgtaccaccatcatcgaa
accggcatcgatattcccagcgccaacaccatcatcatcgagcgcgccgatcgcttcggc
ctggcgcagctgcaccagctgcgcggccgcgtcgggcgctcgcaccaccaggcttacgcc
tatctgctgacgccgaacccgaaagccatgggcaccgacgcccataaacggctcgaagcc
atcgcatcgctggaagatctcggcgccggtttcgcgctggcgacccacgatctggagatc
cgcggcgccggcgagctgctgggcgaagaccagagcggccagatgaccaccgtcggcttc
tcgctctacatggagctgctggaaagcgccgtcgatgcgttgaaaaatggccgcgaaccg
tcgctggaagatctcaccagcagccagaccgaggtggaactgcgcatgccggcgctgctg
ccggaagatttcattcccgacgtcaatacccgcctgtcgctgtacaagcgcatcgccagc
gcgaagagcgacggcgagctggatgagctgaaagtcgagctgatcgaccgcttcggtcag
ttgccggacgcggcacgcaacctgttgcagtgcgcggcgctgcgcctgcatgcgcagaag
ctgggcatcaaacgcatcgagagcaacgagcgcggcggctttatcgagttcggcgacaac
aaccgcgtcgatcccggttatctgattggcctgttgcagggcaatccgcaggtttaccgc
ctggacggcccgagcaagctgaagttcacgctcgatctggccgatcgccaaaaacgcctg
acgttcaccgaagagctgctggacgccttccgcgaacacacgctggcggcttga
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integrated database retrieval system
