Scophthalmus maximus (turbot): 118300487
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Entry
118300487 CDS
T09850
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118300487 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118300487 (ddx46)
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118300487 (ddx46)
Spliceosome [BR:
smau03041
]
Complex A
U2 snRNP components
U2 related factors
118300487 (ddx46)
Complex B
118300487 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
118300487
NCBI-ProteinID:
XP_035480822
EnsemblRapid:
ENSSMAG00025020740
LinkDB
All DBs
Position
2:complement(18039606..18049869)
Genome browser
AA seq
1065 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRDRSRRERSRSRDRRRSRSRDRK
RARRSRSRDRRRSRSRDRRRSGSRSRARRSRSASPSKSRRADEQKPRSKEKDSIDPIPDK
KKVKEEKEDEKIEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQ
GKKWSLEDDEDDDEDGSAPMEADDDEDGEGKGEMKEMEIKEEKEEEDEKEKETPMEPQEE
EDDVDPLDAYMEEVKQEVKKFNMGGMKGNDKKGAMTVSKVVTVVQTKKGHQTHKKKGELM
ENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYESYRRNFYVEVPELAKM
SPEDVNAYRLDLEGITVKGKGCPKPIKTWVQCGVSMKILNAMKKHGYEKPTPIQAQAIPA
IMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKEC
KKFSKSLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRSTY
VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILCKPLEILVGG
RSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYP
CMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVH
RAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGK
TIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKK
RVKDLSAPGAATGPSGGNANASAATGGGMPGIGPPSAGNIQKLEMAKRLALKINAQKNLG
AEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQA
ETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtcgagacactacaggaagcgctcagcgtctcggggtcggtcgggtagc
cgatcgaagagtcgctccccggacaaacgctccaagaaagatgatcgggaccgagaccga
agcaggagggagagatcacggagccgggaccgccgcaggtcccggtcccgagacaggaaa
cgagctaggcgatccaggagcagagacaggaggaggtccagaagcagagacagaaggagg
tcaggcagcaggagcagagcccgaaggtcccgatccgccagccccagcaagagcagacga
gcagatgagcagaagccaaggagcaaggagaaagacagcattgatcctatacctgacaag
aaaaaggttaaagaagagaaggaggatgagaaaattgaggaccaagactttgaccagaac
aagctggaggaagagatgaggaagaggaaggagagggtggagaagtggagggaagagcag
aggaagaaggccattgaaaacattggagagatcaagaaagaactggaggagatgaagcag
ggcaagaagtggagcctggaggatgatgaggacgacgatgaggatggttcagcgccgatg
gaggcagacgatgacgaagatggagaaggtaaaggggaaatgaaagagatggagataaag
gaggagaaggaagaggaagatgagaaggagaaggagactcccatggagccacaggaggag
gaggatgacgttgatcctctggacgcctacatggaggaggtgaaacaggaggtgaagaag
ttcaacatgggaggaatgaaaggaaacgataagaaaggagcaatgacagtatccaaagtg
gtgacagttgttcaaaccaagaaaggacatcaaacacacaagaagaagggtgagctgatg
gagaatgaccaggatgccatggagtactcatcagaggaggaggaggtggatctgcaaaca
gctctaacgggtttccagaccaaacagagaaaagtcctggagcctgtagaccacggaaag
atccagtatgagtcgtaccgcagaaacttctacgtggaggtacctgagctggccaagatg
agtccagaagatgtgaacgcatacaggttggacctggaaggcattactgttaaagggaag
ggctgccctaaacccatcaagacctgggtacagtgtggggtgtcgatgaagatcctcaat
gctatgaagaagcatggctacgagaagcccacccccatccaggcccaggccatccctgcc
atcatgtccggccgagatctcattggcatcgctaagaccggcagcgggaaaaccatcgcc
ttcctgttgcccatgttccgacacataatggaccagaggcccttggaagagtctgaggga
cccatctctgtaatcatgaccccgaccagagagttggccctgcagatcaccaaggagtgt
aagaagttctccaaatcgctggggctcagagtggtgtgcgtttatggaggcactggtatc
agcgaacagattgctgagctgaagagaggagctgagatcattgtgtgcacaccaggaaga
atgattgacatgttgggggccaacagtggtcgagtgaccaacctgcgcagatctacttat
gtggtgttggacgaagcagacaggatgtttgacatgggttttgagccacaggtgatgcgt
attgtggacaacgtgcgcccagaccgccagacagtcatgttttcagccaccttccccaga
gccatggaggcgctggctcgtaggatcctgtgtaagcctcttgagatcctggtgggaggc
cgcagtgtcgtctgctccgatgtggaacaacacgtgttggtgattgaagaggacaagaag
ttcctgaaactgctggagattctgggtcactaccaggagaagggttcagtcattatcttt
gtcgacaaacaggagcatgcagacgcgctgctcaaagacctgatgaaagcctcgtaccca
tgcatgtctctgcatggaggaattgaccagtatgacagagacagcatcatcaatgacttc
aagaatggagcttgtcgtctgatggtggccacctccgtggcagccagaggcctggacgtc
aagcaactgatcttggtggtcaactacaactgtcccaaccactacgaggactacgtccac
agggccggacgcacgggccgagcaggcaacaagggatacgcctacacattcatcacagag
gatcaagttcgctatgctggtgacatcatcaaagccttggagctgtcaggttctcctgtc
ccaccagagctggagcagctctgggcctccttcaaagaccaacagaaagcggaggggaaa
accattaagagcagcagcggcttctcagggaaaggcttcaagtttgacgaaacggagcat
gccctggccaacgagagaaagaagctgcagaaagcggctctcggactacaggactcagat
gatgaggatggagccctggatattgaggagcaaatagagagcatgttcaactctaagaag
agggtgaaggatctgtctgctcccggggcggctactggtccctcaggaggaaatgccaac
gcatcagctgccactggaggaggaatgccaggcatcggacccccgtctgctggaaacatc
cagaaactggagatggccaagaggcttgcgctcaagatcaacgctcagaaaaacctggga
gcagaggctcaggacgtgatgcaacaggccacgaacgccatcctgcgaggaggcaccatc
atgacgccgtcggtgtctgccaagaccatcgcggagcagctggcggagaagatcaatgcc
aagctgaactacaccccggtggagaagctggaggaggagcggcaggcagccgaacaggca
gagaccgtcaagagatatgaagaggagctggagatcaacgacttcccccagacggccagg
tggaaggtgacatctaaagaagctctgcagaggatcggtgaatactctgaagcagctatc
accatcagaggaacctatttccctccaggcaaggagcccaaggaaggagaacgcaagatc
tacttggctattgagagtgcaaatgaactggctgtacagaaagccaaaacagagattaca
cggctaatcaaggaagaactcatcagattacaaaattcctaccagccaacgagcaaaggc
cgctacaaagtgttgtag
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