Scophthalmus maximus (turbot): 118315015
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Entry
118315015 CDS
T09850
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118315015 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118315015 (cnot4a)
03019 Messenger RNA biogenesis [BR:
smau03019
]
118315015 (cnot4a)
04121 Ubiquitin system [BR:
smau04121
]
118315015 (cnot4a)
Enzymes [BR:
smau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118315015 (cnot4a)
Transcription factors [BR:
smau03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118315015 (cnot4a)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118315015 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118315015 (cnot4a)
Ubiquitin system [BR:
smau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118315015 (cnot4a)
BRITE hierarchy
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-RING_2
zf-C3HC4_2
Med7
DZR_2
RDD1
zf-CCCH_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
118315015
NCBI-ProteinID:
XP_035497805
EnsemblRapid:
ENSSMAG00025026343
LinkDB
All DBs
Position
7:10953157..10963432
Genome browser
AA seq
800 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRSNNSNGKDGWPTLSGHNKLANGLSEDRKS
PPLLDYLDQEVLTSDGLDTELGPGQHAALSPFSSNCDSNSPSDKPPESIGLVNGETLQQM
PTSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLP
PFPSSPRGSSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQCPSSPGPLGQGSNHGPGLPPPNLSAASHHFPSGLPRLPQLHHR
AIYSSFSFPGSQNSQASQQQPSARHPWMGVPTRNNLTHLNHSASAASHSNFLDLNLPPQH
NTGLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSVNHI
GGPVGPAGITHSLSWDGTASWMDPAIITGRNGIPATAGNSLDCLQDDNPPHWLKSLQALT
EMDGPASSAVPTPQPLHSGLLDAHIPLHHRAAGGWAPYLPPPTANPASQFHSPPPGFQTA
FRPPGQPATELLQSAAVDRH
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaaatgaaggatgaccccatggagtgccctctgtgcatggagccg
ctggagattgatgacgtcaacttcttcccctgcacttgtggctaccagatctgccgcttc
tgttggcatcgcatccgcacagatgagaacggcctgtgccccgcctgcagaaagccgtac
ccagaggacccggctgtgtacaagcctctgtcacaggaggagatccaaaggataaagaat
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgcaagcatctg
gccagtgtcagagtggtccagagaaatctggtgtttgtggtggggctctcgcagcgactc
gctgacccggaggtcctaaaacgaccagagtattttgggaggtttggtaaaatccataaa
gtggtcatcaacaatagtacatcttatgccggttcacaggggcctagtgctagcgcatat
gtcacttacatccgctctgaagacgctttaagagcaatacagtgtgtgaacaatgtggtt
gttgatggcagaacactcaaggcttctttaggcacaacaaagtactgcagttacttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacatgagctgggggatgaagca
gctagctttactaaagaggagatgcaggctggaaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaatcaaccctagctttctacaacctccagcatgtggtacagag
aagtcgaagagtaaatccaactccacacagagatccaacaatagcaatggtaaagatggg
tggccgacactgtcagggcataacaaactggccaacgggctttcagaggaccgcaagtcc
cctccgctactagactacctagaccaagaagttcttacttcagatgggctagatacagag
ctgggtcctggtcagcatgccgccctgtcccctttctcctctaactgtgacagtaacagt
cccagtgataaacctccagagtcgatcggtttggtaaatggagagacattacaacagatg
cccaccagtgactccccctccccgcccccgggtttaaccaagcccagcctggtggtgccc
atcagtgtgtcagacctcacagcccgctcgcccttcgagggtgcagcagcagagtcccag
tcactcttttcagacaacagtaacttcagacatcctaaccctctccccgctggcctgccc
ccgttccccagctccccccgcggcagctctgactggcccatgacccctgaaccacagagc
ctcttcacatcagacacaataccagtgtcttcttccacagactggcaggcggcctttggc
ttcggctcatccagcaaacagcaggacgacgatttgggcttcgatcctttcgacgtcacc
cgcaaggctttggctgacctgatcgagaaggagctgtcggtgcaggatcagtgtccctca
tccccggggcccctcggacaggggagcaatcatggtcccgggctgccaccccccaacctc
agtgccgcttctcaccacttcccaagtggcctgccacgcctcccccagctccaccacaga
gccatctacagctccttcagcttccccggcagtcagaacagccaggccagtcagcagcag
ccatctgccagacacccctggatgggcgtccccacacggaataacctcacacacttgaac
cactcagccagtgctgcctcacacagtaatttcctggacctgaatctgccccctcagcac
aacacagggctgggagggatccccatctcagaaaacagtggctctatagatggcttaaat
gtgaaagagtggcaggatggcctcagagctctcctgcccaacatcaatatcaacttcggg
ggtctcccaaactcctcttcctcttcatcctcctcatcctccaacagtgttaatcacatc
ggtgggccggtggggccggcaggcatcacacacagcctgagctgggatggcacagccagt
tggatggaccctgcgatcatcacaggtagaaatggcatcccagccacggcgggcaacagt
ttagactgtctccaggacgacaacccaccacactggctcaagtccctgcaggcgctcaca
gagatggacggcccagccagttcagcagtgcccacaccccagcccctccacagtggcctc
ctcgacgcccatatccccctccaccacagagccgcgggcggctgggctccctacctgccc
cctcccacagccaaccccgccagccagttccactcccctcccccaggcttccagaccgcc
ttcagacccccaggacagcctgccacagagctgctacagagtgccgctgtggaccgccac
tga
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