Shewanella mangrovisoli: K0H60_04330
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Entry
K0H60_04330 CDS
T09316
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H60_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_04330
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H60_04330
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H60_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYK09941
LinkDB
All DBs
Position
complement(966727..968517)
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AA seq
596 aa
AA seq
DB search
MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL
RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ
NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ
EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIER
LINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGRDAR
KTPAPKTADNGDLAQQKGQNAQPSSGQRSNQGQRSNQGLRSHSDQRSNQGQRSHQGQRNQ
QQEQHNQQGESKRPQAAKNAEHRNAPATAEQARSPKPQDKYPQRGKGSANSGNSEHKANR
EHKAKGQSHSGSQQRSQQARHHEGSSEKTNQGQRRQGKPQGRVQPSTNSTANAPKK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctaggtttatctgctccaatccaaaaagccgtgactgaacaaggt
tatgacacaccctcgcccattcaagcacaggcgattcccgccgtactgacgggtaaagac
gtgatggctgcggcccaaacggggacaggaaaaaccgcaggctttaccctgccgttgctc
gaattactctctaaaggcaataaagcgaaggcgggacaaatccgcgccttagtgctcacc
cccacgcgcgagttagcggctcaagtaagcgaaagtgttgaaacctatggtaaatatctg
ccattacgctcagcggttgtctttggtggcgtgccgattaatcctcaaattcaaaagcta
cgccacggggtagatgtactggtcgccacgccaggacgattattagatcttgagcagcaa
aaggcggtgaaatttaatcaactcgaagtcttagtgctggatgaagcggatcgcatgctc
gacatgggttttatccgcgatatcaaaaaaatcctcgccatgttgcccgctaaacgacaa
aacctgatgttttcggcgaccttctccgatgagatccgcgagcttgccaaaggcctagtg
aatcaaccagtagaaatttcagttacaccacgcaacgccgcggcaaacacagtcaaacaa
tggatttgccccgtcgataagaatcaaaaatcggcgctgcttattcagctcatcaagcag
gaagactggcagcaggtattagtgttttcacgcactaaacacggtgccaacagactggct
aagagtcttattcaagccgagatcagcgccgccgctatccacggcaacaagagccaaggc
gcacgcaccaaagccttagccgactttaagagtggcgaagtacgcgtactcgtggcgacc
gacattgcggcgcgcgggctcgatatcgaccaattgccacaagtggtgaacttcgatctg
cccaatgtgcccgaagattacgtgcaccgcattggccgcaccggccgtgctggcgcctta
ggccaagccgtatccttagtcagtagcgaagaaactaagctgctcagggacattgagcgt
ttgatcaatcgcgtgcttgaaaggcaggaagttgaaggcttcagtcctgtccatgcgctt
cccgaatcgaccctaaatgcccatggtaaagagaacaaaatcaaagccgtggcgagccaa
cgtaagcaccgcagtgcgggtaaacccgcaccaagagccggttcgggccgcgatgctcgt
aaaacgcctgcacctaaaactgcagacaatggtgacttagcacagcaaaagggccaaaac
gcgcagccaagctcaggccagcgtagcaatcaaggccagcgtagcaatcaaggcctgcgc
agtcactcagaccaaagaagtaatcaaggccagcgcagtcatcaaggtcaacgcaaccag
cagcaagagcaacacaatcagcaaggcgagtctaagcgtccgcaagcggcaaaaaacgct
gagcacaggaatgcacctgcgactgccgaacaggcccgctcgccaaaaccacaggataaa
tatccgcaacgcggtaaaggctctgctaactcaggcaatagcgaacataaggccaatcgt
gagcataaagccaaaggccaatctcattcaggctcacagcaacgcagtcaacaggctcgc
catcacgaagggtctagcgaaaagacaaaccaaggacagcgtcgccaaggcaagccacag
ggacgagttcaaccgagtacaaactccaccgcgaatgcccctaaaaagtaa
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