Sinorhizobium meliloti 1021: SMc04450
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Entry
SMc04450 CDS
T00058
Symbol
mfd
Name
(GenBank) Probable transcription-repair coupling factor (TRCF) protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sme
Sinorhizobium meliloti 1021
Pathway
sme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMc04450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sme03400
]
SMc04450 (mfd)
Enzymes [BR:
sme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMc04450 (mfd)
DNA repair and recombination proteins [BR:
sme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMc04450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAC46230
RhizoBase:
SMc04450
UniProt:
Q92PS9
LinkDB
All DBs
Position
complement(1787537..1791052)
Genome browser
AA seq
1171 aa
AA seq
DB search
MTMIPGFDPRKILAATREITIGPVPTGAEALVLAELARAGAPVAYILSDGQKVADLEQVL
GFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAAL
QRISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVP
GSGEPLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSL
FGAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERS
KLVLDYYDARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNAVRLSPFTEH
EGEARQVVNIEARQGLRWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEG
SLDRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQDILG
DRLVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYA
DDAKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAER
HTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKT
EVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALT
KKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYV
CPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGL
DVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQS
LDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDT
GWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQ
HLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQS
IFFQRELATPEKRLSGAAMVMTQLAALAKAG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgatacctggcttcgaccctaggaagattcttgcggcgacgcgggaaattacg
atcggcccggtgcccacgggtgccgaggcgctcgttctcgccgaactggcccgggccggg
gcccccgtcgcctatatcctctccgatggccagaaggtcgctgacctcgaacaggtgctc
ggtttcgtcgctcccgatatcccggtcctgacgctgccgggttgggactgcctgccttac
gaccgggtctcgccgagcgccgacacctcggcgcgcaggcttgccgcgctgagcgcgttg
atcgcccaccgcaggaaaccgcatccggcgatcgtgctcgtcaccatcaatgcagcgctg
caaaggatctcgccgcaggatgtgatcgaaagcctcgccttcacggcacggcccggcaac
cagatccgcatggacgaccttgccgcccggctggagcgaaacggcttcgaacgggtcccg
accgtgcgcgagatgggcgaattcgccgtacggggaggcatcctcgatgtctatgtaccc
ggcagcggcgagcctttgcgcctcgacttcttcggcgacacgctcgaggcgatccgctcc
ttcgatcccgcaagccagcgcacgatcgggcaggtccggtccctcgacctcaatccgatg
agcgaggtatccctgacgcccgagacgatcagccacttccgaaagcagtatctttctctc
ttcggagcggcgacgcgcgacgatgcgctttatcaggccgtgtcggagggacggcgctat
gccggcatggagcattggctgccgcttttctacgatcggctcgaaacggtcttcgactat
ctcgacggctttcgcatcgtcaccgaccatctggcgcgcgaggccgcggcagagcgctcg
aagctcgttctcgactattacgacgcacgcctcgcctcggcttcgccgggcaagtctcag
gtcacccagggcacgccctacaagcccgtgccgccggacatgctctatctcactgcgaaa
ggcttcggcgaagccctgaatgatctcaatgcggtccgcctttcgccctttaccgaacac
gagggcgaagcccgccaggtcgtgaacatcgaagcgcgtcagggcctgcgttgggccaaa
ccggcgggcgaggccgacaacgacggcacgcgcaccaatgttttcgatcaggccgtgaag
catatcgccgagaagcgggcaaaaggcgcaaaggtcatcgtgtccggctggacggagggc
tcgctcgaccggctgcttcaggttctggccgagcatggtctcgccaatatccgtccggtc
aaggcgctctcggatatcggttcgctcaagccgggggaggccgcatccgcggttctcagc
ctcgaagcgggattcgagaccggcgacctcgtcgtcatcggcgagcaggacattctcggc
gaccgtctggttcgccgctccaagcggcgcaagcgcggcgcggatttcatcgccgaagtg
accggcctcgacgagggcagttatgtcgtacacgccgagcacggtatcgggcgcttcgtc
ggcctcaggacgatcgaggccgccggcgcaccgcatgactgcctcgagctcgtctatgcg
gacgatgccaagctgttcctgccggtggaaaatatcgagcttctgtcgcgctacggctcg
gaaggaaccgatgctgtcctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggcc
aagctcaagaaacggctgctcgacatggccggcggcctcatccgcatcgctgccgaaaga
catacgcgccatgcgccggtccttgcggcgcaggacggggtctatgacgagttcgccgcc
cgcttcccctatgacgagaccgaggaccaattgaactcgatcgatgccgtccgcgacgat
ctcggccgcggccggcccatggaccgcctcgtgtgcggcgatgtcggcttcggcaagaca
gaggtggcgctgcgtgccgccttcatcgcggcgatgaacggcgtgcaggtcgccgtggtg
gtgccgacgaccctgcttgcgaggcagcacttcaagaccttctccgatcgtttccgcggc
ttgccgatacggatacagcaggcctcacggctggtcggctcgaaggatctggcgctcacg
aagaaagaggtcgccgaaggcaagacggacatcgtagtgggcacgcacgcgctgctcggc
tcgtcgatcaaattcgccaatctcggcctgctcatcatcgatgaggagcagcatttcggt
gtcaagcacaaggaacgcctgaaagagctgaagaccgatgtgcacgtcctcacgctctcg
gcgacgcccattccgcggacgctgcagcttgccctcaccggagtgcgcgaattgtcgctg
atcacgacgccgccggtcgaccgcatggcggtgcgaaccttcatttcgcccttcgatgct
ttggtgatccgagagacgctgatgcgcgagcactaccgcggcggccagagcttctatgtc
tgtccgcgcgtgagcgatcttccggaaatccacgatttcctgaaatccgacgtgccggaa
ctgaaggttgccgtggcgcacgggcaaatgccggcgaccgagctcgaagatatcatgaac
gccttctacgaggggcgctacgatgtgctcctctcgacgacgatcgtagagtccggtctc
gacgtgccgaccgccaacaccctgatcgtgcatcgtgccgatatgttcggcctcgcccag
ctctatcagctgcgcggtcgggtagggcgctccaaggtccgcgccttcgcgctcttcacc
cttcccgtcaacaagacgttgaccgggccggcggaacggcgcctcaaggttctccagtcg
cttgatacgcttggagccgggttccagctcgccagccacgacctcgacatccgcggagcg
ggcaacctgctcggcgaggagcagtccggtcacatcaaggaggtcggcttcgagctctac
cagcagatgctggaggaggcggtcgccgagctcaagggcgaagaggagatccacgatacc
ggctggtcgccgcagatatcggtcggaacgccggtgatgatccccgaagagtatgtgccg
gacctcaatctgcggctcggcctttatcggcgcctgggtgaactgaccgacctcaaggag
atcgacggcttcggtgcggagctgatcgaccgtttcgggccgctgccgacggaggtgcag
cacctcctgaaaatcgtctacgtcaagtcgctctgccgcacggcgaatgtcgaaaagctc
gatgcggggccgaagggcgtcgtggtccagttccgcaacaaggaatttcccaatcccgcc
gcgctcgtgggctacattgcgaaacagggaacagtcgccaagatccgcccggaccagagc
attttcttccagcgcgagctcgcaactccggaaaaacgcctttccggcgccgcgatggtg
atgacgcagcttgcagcgctcgcaaaggccggttga
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