Silurus meridionalis (southern catfish): 124375622
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Entry
124375622 CDS
T08004
Symbol
tnfrsf11a
Name
(RefSeq) tumor necrosis factor receptor superfamily member 11A isoform X1
KO
K05147
tumor necrosis factor receptor superfamily member 11A
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
124375622 (tnfrsf11a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
smeo04050
]
124375622 (tnfrsf11a)
04090 CD molecules [BR:
smeo04090
]
124375622 (tnfrsf11a)
Cytokine receptors [BR:
smeo04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
124375622 (tnfrsf11a)
CD molecules [BR:
smeo04090
]
Proteins
124375622 (tnfrsf11a)
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Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Motif
Other DBs
NCBI-GeneID:
124375622
NCBI-ProteinID:
XP_046690096
LinkDB
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Position
21:4176001..4189201
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AA seq
578 aa
AA seq
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MRAYFSTSWIFRGWIYCLIFALCIQRKYARPTCSQLQYLWKGKKCCNKCEPGTYLSVHCT
DNEETRCRPCGKDEYQSEYNTEEECHQQKFCDEGKGFYRPSPSSTTELESCRCKEGYQCT
TSYCEFCDKIKPCPPGKGLAGEAGKKSCQDCEYGFFSDSTSAEACKKWTDCKAIGKTEEK
PGSTEADVVCGPPFVPSTSWAIVAIPCTIIVIFAVILSCYKDKLSILSVNLRTCVQNIKQ
SRIQQETLTPPYHSNRPLYEITPQEDDSAAEYLSMCSKANCDSPGLDKPQGNKKNTHLSK
LEQDRADVSSGNSTEGSEGPGSPLPGSSCSCLIVKEPVEVGENEDCSELVATGLAGCCSC
AQGDNMVAKPRKDCDSSLKEPPLCGNCYTEGVPGCLQGSQELYLDYSSPGGKEVMSEVRD
LHSDTSAYERNEPQCCSIESTVVISSISTNNNQGLSLISNMDNSKPKADADLEVQSQNTE
AALTCAQVTGNNNTTFISTGQVMNFTGDVIMVYVSQTSLGSSGDEEPYANPVQEQSAECG
IQNMHKSYEPTQEYERHIPVQEMTNQRPELNLSVSTSA
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgagagcttatttctccaccagttggatattccgaggctggatctactgcctgatcttt
gccttatgcatccagagaaaatacgccagaccaacatgcagccaattacagtacctctgg
aaaggcaagaaatgctgtaacaagtgcgaaccaggaacatatttgtctgtgcattgcact
gacaatgaggaaaccaggtgtcgaccgtgtgggaaggacgagtaccagtcagaatataac
acagaggaggagtgccatcagcagaagttctgtgatgagggtaaaggattttatcgtccc
agtcccagtagcaccactgagcttgaatcatgtcggtgtaaagagggttaccagtgtacc
acctcctactgtgagttctgtgataaaatcaaaccctgtcctccaggcaagggacttgca
ggagaggctggcaagaaatcatgccaggactgtgagtacggctttttctccgattccacc
tcagcagaagcgtgcaagaaatggacagattgtaaagccatcggcaagaccgaggaaaag
ccaggcagcactgaagcagatgtagtgtgtggaccacctttcgtgccttcgacatcctgg
gccattgtggcaataccctgcaccataattgtcatatttgctgtgattctttcctgctac
aaggataaactaagcatcctttccgtcaatctacgtacctgtgtccagaacattaaacag
agcagaatccaacaagagacgctaacaccaccataccatagcaaccgccccttgtatgag
atcacgcctcaggaagatgacagtgctgcagaatacctgagcatgtgctccaaagccaat
tgtgactcccctggcctggacaagcctcaaggaaacaagaagaacacgcacttgtccaag
ctggaacaggaccgagctgatgtatcgtcaggcaactccactgagggatctgagggtccg
ggttctccgcttcctggcagctcctgcagctgcctgattgtgaaggagcctgtggaggtg
ggagagaacgaggactgcagtgagctggtggctacaggcctggctggctgctgctcctgt
gctcagggtgataatatggttgccaaaccaagaaaggattgtgattctagcctgaaagaa
cctcctctttgtgggaactgctacactgagggtgttccaggatgtctgcaaggctcccag
gagctctatctggattacagcagtccaggtggcaaggaagtcatgtcggaggtcagggat
ttacacagtgacacaagcgcatatgagagaaatgagccgcaatgctgcagcatcgagtcc
actgttgtaatttcatcgattagcactaacaacaaccaggggctctcacttatctccaac
atggataacagcaagcccaaagctgatgcggatttggaagtccagagccagaacacagag
gccgctctcacctgtgctcaggtgacaggaaacaacaacaccacattcatctctaccggc
caggtgatgaacttcacgggtgatgttatcatggtgtacgtcagccagacttcactgggc
agcagtggagatgaagagccttatgccaatcctgttcaggagcaatcggctgaatgtggc
attcagaacatgcacaaatcctacgaacccacacaagagtatgagagacatatacccgtg
caggaaatgacaaaccagcgccctgagctaaatctctctgtctcaactagtgcctga
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