Silurus meridionalis (southern catfish): 124378557
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Entry
124378557 CDS
T08004
Symbol
lig4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124378557 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124378557 (lig4)
Enzymes [BR:
smeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124378557 (lig4)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124378557 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
124378557
NCBI-ProteinID:
XP_046694236
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All DBs
Position
24:13032549..13036805
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AA seq
909 aa
AA seq
DB search
MEGTSNSDTTSQTSVAAQVPFLDLCTVLENIQKAKNRPDKAKCLKDFLDSWRRFHAALHK
ENPNTTDSFYSAMRLIVPPFERERMAYGIKESMLAKLYIEVLGLPKSGPEAXKLLNYRAP
TSSKGESGDFALMAYFVLKKRCTSQGNLSIKEVNDFLDSVALNNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHTDAPELYNVTTDLDRVCRQLHDPSVSL
NEVSIGLFSAFKPMLAAVANIRQVEKQMGNQPFYIETKLDGERIQLHKDGDVYKYYSRNS
FEYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTETFMQKGSKFDVKRLL
DDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLKTVFTPVKGRIQLVQYTEAKTRQEVI
NALNEAIDDREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RSGMLSHFLCAVAETSSPGEKPTMFHTLCRIGSGYTMKELYELGLKLAKHWKVYRKSNPP
VGILCGTEKPEVYVEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIREDKEWYDCMT
LDELNQFRDKASGKLASRHFYFKEDEPEKKKRKLASKPKKTIGIVDHFKAQDLSTVTKET
DMFEDVEFCVMSGSSTHSKADLEKAVARCGGIVVQNPGKDTYCVIAGVENVRVKNLIGSN
QHDIVWASWLLECLDRKQVLPWQPKHMIHMSPSTKEHFAKEYDCYGDSYYVDTDEQQLRD
VFSRMGPVEVDAGSIASIEQKYGWDDLPISMFRPYRAYFDRCAEIGNRTSFIKGTCLDFR
ALQFRFHGGAVVESLEEGVSHVVVAGEERLLELRTHRRLFTKKFKIVRETWVTDSINAGH
VLNDSDYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaacatccaacagtgacactacatctcaaacatctgtggctgcacaagtgcca
tttcttgacctgtgcactgttcttgaaaacatccagaaagctaaaaatcggccagacaag
gcgaagtgtttaaaagattttttagattcatggagaaggtttcatgcagctcttcacaaa
gagaatcccaacactacagactcgttttattcagctatgcgtcttattgtgccccctttt
gaaagggagagaatggcctacggtatcaaagaaagcatgttagccaaactctacatcgag
gtcttaggtcttccaaaatcggggccagaggcanaaaaacttcttaattacagagcccct
acttcatcgaaaggagaatctggagactttgcacttatggcttattttgtccttaaaaag
agatgcacaagccaaggtaatctgagtatcaaagaagtcaatgatttcttagactcagta
gctttgaataatgccagcaagcagaaagatcttgtaaagaaaagccttttacatttgatt
acgcagagctcagcattagaacaaaagtggcttattcgtatgatcctgaaagacatgaaa
cttggcataagcaaggagaccgttctccaggtttttcacacagatgctccagagctgtac
aacgtcactacagacttagacagggtctgcagacaactacatgacccctcagtttccttg
aatgaagtgtccattggcctgttttctgccttcaagcctatgctggcggctgttgccaac
attcgccaggtggagaaacagatggggaaccagccgttctatattgagaccaagctggat
ggtgagcgcattcaactccataaggatggggatgtgtacaagtactacagccggaactcg
tttgaatatacgcaacagtttggggcttcgccactagagggttccctcacaccgtacatc
cacaatgtctttaaatctcatgttgtcaattgcatcttggatggagagatgatggcttat
aatcccaccacagagaccttcatgcaaaaaggaagcaagtttgatgtcaagcggttgctg
gatgactcagacttgcagacttgcttttgtgtgtttgatgtcctgcttgtcaatgaccag
aagtttggaaacgagcctctgaagaagcgttacgacactctcaagacagtcttcacaccc
gtcaaaggccggatccagctggtacagtacactgaagccaaaaccaggcaggaagtgata
aatgctcttaatgaggctattgacgatcgtgaagaaggcatcatggtcaaagacccaatg
tccatctacaagccagataaacgtggtgaaggctggttgaagatcaaacctgaatatgtt
gacggcctaatggatgagttggatttgctaatagtgggaggctactgggggaaaggcaga
cggagcggaatgttgtcacactttctttgtgctgttgccgaaacttcaagtcctggagag
aagccaacaatgttccatacactgtgtcgcattggatcaggctacaccatgaaggagcta
tatgagcttggcctgaaactggccaaacactggaaagtttatcgcaagagtaacccccct
gtaggcattttgtgtggaacagagaagccagaagtttacgttgagccaagaaactcggtg
atcattcaagtcaaagcagcagaaattgttaccagtgacatgtacaaaaccaattgcact
ctacgattccccaggattgagaggattcgagaggacaaagaatggtatgactgcatgacc
ttggatgagctaaatcagttccgagataaagcctccggtaagctggcatctaggcacttt
tacttcaaggaagatgagccagaaaagaagaaacgcaaacttgcatccaagcctaaaaag
accattggcattgttgatcacttcaaagctcaagacctgtccactgtcaccaaagagact
gacatgttcgaagatgtggaattctgcgtcatgagtggaagcagtacacattccaaggcc
gatcttgaaaaggcagttgcccgttgtggaggcattgtagtccaaaaccctggaaaggac
acgtactgtgtgatcgcaggcgttgaaaacgtgcgggtaaagaacctcatcggttcaaac
caacatgacatcgtatgggcttcctggctcctggaatgtctggacaggaaacaggtgcta
ccatggcaacccaaacacatgatccacatgtccccttcgacaaaggaacactttgctaaa
gagtatgattgctatggagacagctactacgtcgacacagatgagcagcagctgagggac
gtcttcagcagaatggggcctgttgaagtggatgcaggatccatcgcttcaatcgagcag
aagtacggctgggatgatttgcctattagcatgttcagaccttatcgtgcttactttgat
cgatgtgctgagattggaaatcgaacaagttttattaagggtacatgtcttgactttcgg
gctctgcagtttcgcttccatgggggcgcagtagtagaaagcctagaagaaggggtgtcg
catgtggtcgtggcaggtgaagagagattattggagctgaggacacacagacgcctcttt
acaaaaaagtttaaaatcgttcgagaaacatgggtgactgattccattaacgcaggacac
gttcttaatgacagtgattaccttgtgtaa
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