KEGG   Silurus meridionalis (southern catfish): 124378640
Entry
124378640         CDS       T08004                                 
Symbol
cul4a
Name
(RefSeq) cullin-4A
  KO
K10609  cullin 4
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03420  Nucleotide excision repair
smeo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124378640 (cul4a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    124378640 (cul4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smeo04121]
    124378640 (cul4a)
   03400 DNA repair and recombination proteins [BR:smeo03400]
    124378640 (cul4a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smeo04147]
    124378640 (cul4a)
Ubiquitin system [BR:smeo04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     124378640 (cul4a)
DNA repair and recombination proteins [BR:smeo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      124378640 (cul4a)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      124378640 (cul4a)
Exosome [BR:smeo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   124378640 (cul4a)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 124378640
NCBI-ProteinID: XP_046694338
LinkDB
Position
24:14921700..14949535
AA seq 754 aa
MMAEETRQNRSSGFSALVENSNGVRKTPSSKSGSSKKLVIKNFKDRPRLTETYTEDTWIK
LRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPMLYKQLRQVCEDHVRAQIRQFREDS
LDSLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRAHIVSD
SAVQSRTVEGILEQIERERNGETVDRSLLRSLLGMLSDLQVYKESFENRFLTETDRLYAA
EGQRLMFDRDVPEYLHHVARRLEEENDRVISYLDQSTQKPLISAVEKQLLGEHMTGILQK
GLSTLLDENRVTELTLLYLLFSKVKGGLPVLLQFWREYIKSFGGEIVGSPEKDKDMVQEL
LDFKDKMDNVAQGCFQRNEGFINAMKEAFESFINKRPNKPAELIAKYVDSKLRAGNKEAT
EEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGA
AFTSKLEGMFKDMELSKDVMIQFKQYMQNQSEPSNIDLTVNILTMGYWPTYTPMDVHLPS
EMVKLQEVFKTFYLGKHSGRKLQWQPTLGHAVLKAEFKEGKKELQVSLFQTLVLLMFNEG
EEFTLEEIQTATGIEESELRRTLQSLACGKARVLNKNPRGKEVEDGDRFNFNNDFKHKLF
RIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQLKF
PVKPGDLKKRIESLIDRDYMERDKESPNQYHYVA
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgatggccgaagagacccgacagaacaggagctccggtttctcagctctggttgaaaac
agtaacggagtgagaaaaactccgagctccaaatccggcagctccaagaaactcgtcatc
aaaaactttaaagacagacccaggctgacggaaacctacaccgaggacacgtggataaag
ttacgcgatgccgtcggcgctatccagaacagcacatcaatcaaatacaacttggaggag
ctttatcaggcagtggaaaatctttgctcttacaaggtctcgcccatgctgtacaaacaa
ctccggcaagtgtgtgaggatcatgtgcgagctcagatccgccagtttcgagaagactct
ctggacagtctttcttttttgaagaggatgaacagatgctggcaagatcactgcagacaa
acaatcatgatccgtagcattttcctctttctggatcgcacatacgtcctccagaactcc
cttcttccctccatatgggacacgggactggagctgtttcgcgcacacattgtaagtgac
agcgcagtccagagtcgtacagttgaagggatattggagcagattgaacgagagaggaat
ggcgagacggtggatcggagtctcctgcgcagcttactgggcatgctctcagacctccag
gtgtacaaggagtcgttcgaaaacaggttcctgaccgagacggatcgtttgtacgcagct
gagggacagagactgatgtttgacagagatgtgcctgaatacctgcaccatgtagcacgg
aggctggaggaggagaacgatcgcgttatcagttacctggatcagagcacacagaaaccc
ctgatctctgcagtagaaaagcagcttctgggggaacacatgactggcattttacagaaa
ggtctcagcacactgttggacgagaaccgtgtgactgagctgacactgctatacctgctc
ttcagcaaagtgaaaggaggcctgcctgtattactgcagttctggagagagtacatcaag
agctttggtggtgagattgttggctctccggaaaaagataaggacatggtgcaggagctg
ctggacttcaaggataaaatggacaacgtggcgcaaggctgcttccagaggaacgagggc
ttcatcaatgccatgaaggaggccttcgaaagctttattaacaaaagacctaacaaacca
gcagagcttattgccaaatacgtcgactccaaactacgcgccggaaacaaagaggccacg
gaggaggagctggagagaatcctcgacaagatcatgatcatcttccgcttcattcacgga
aaagacgtgtttgaagcattctacaaaaaagacctggctaagcgcttgctggtgggcaaa
agtgcctctgtggatgctgagaaatccatgctgtccaaactcaagcatgagtgcggtgca
gccttcaccagcaaactcgaaggcatgtttaaagatatggaactctccaaagatgttatg
atccaattcaaacagtacatgcagaatcagagtgaacccagcaacatcgatctgacggtc
aacatcctaaccatgggctactggcccacctacacccccatggatgtccacctgccctct
gagatggtgaagcttcaggaggtgttcaaaacgttctatcttgggaagcacagtggaaga
aagcttcagtggcagcccacactgggtcacgcggtactaaaagctgagtttaaggagggg
aaaaaggagctgcaggtatctttattccagacccttgttctgctcatgtttaatgaaggg
gaggagtttacactggaggagatccagacagctacaggaatagaggagagcgagctgcga
cgcacgctgcagtccctggcatgcgggaaagctcgagtgcttaataaaaatccccgaggg
aaagaagtggaggacggagaccgcttcaacttcaacaacgacttcaagcataaactcttc
cgcattaagatcaaccagattcagatgaaggagacggtagaggaacaagtgagcaccaca
gaacgggttttccaggacaggcagtaccagatagatgcagcagtcgtgaggatcatgaag
atgagaaagactctcagccacaacctgctagtgtcagaactctacaaccaactcaaattc
cccgtgaagccaggcgacctgaagaagcgcatcgaatccctcattgatcgagactacatg
gagagagacaaggagagccccaaccagtatcactatgtggcctga

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