Silurus meridionalis (southern catfish): 124381051
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Entry
124381051 CDS
T08004
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
smeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124381051 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
124381051 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124381051 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124381051 (gtf2h2)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124381051 (gtf2h2)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124381051 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Matrix
Motif
Other DBs
NCBI-GeneID:
124381051
NCBI-ProteinID:
XP_046698412
LinkDB
All DBs
Position
27:complement(17504692..17509123)
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AA seq
394 aa
AA seq
DB search
MMDEEPERTKRWEGGYERTWEVLKEDESGSLKASVEDILFEAKRKRVFESHGQVRLGMMR
HLYVVIDSSRTMEDQDLKPNRLTSTLKLMEYFVEEYFDQNPISQIGIITTKNKRAEKLTE
LAGNPKKHTAALKKAVDSGCVGEPSLYNALSIAMQTLKHMPGHTSREILVIFSSLTTCDP
ANIYDLIKTLKSLKIRVSVIGLSAEVRVCTVLTRETGGIYNVILDESHFKELLTFHVNPP
PASSSSECSLIRMGFPQHIIASASDQDSKPSFSMSHLESSDEGPGLSLGGYYCPQCRAKY
TELPVECKVCGLTLVSAPHLARSFHHLFPLEAFQERPLEEHTGDRFCQACQGELKDKSVF
TCPVCVSVFCVECDIFIHDTLHCCPCCIQRQGAS
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgaggaaccggagagaacgaagcgttgggaaggaggttatgaacggacatgg
gaggtgctgaaggaggacgagtccggctctctgaaagccagtgtagaggacattctgttc
gaggccaaaaggaagagggtgttcgagagtcatgggcaggtccgacttggaatgatgcgt
cacctttacgtggtgatcgactcatctcggacgatggaggatcaggacctgaagcccaac
cgactcacatctacactgaagctcatggagtattttgttgaagaatacttcgatcagaac
cccatcagtcagatcggaatcatcaccaccaagaacaaaagagccgagaaactcactgag
ctcgcaggaaatcctaagaagcacacggcggcgttgaagaaagctgtggactcggggtgt
gtgggcgagccgtctctgtacaacgccctcagcatcgccatgcagaccctcaaacacatg
ccaggacacaccagccgagagattctggtcatcttcagcagtctgaccacctgcgatccg
gccaacatttacgacctcatcaagacgctgaaatcccttaagatccgagtgtctgtgatc
ggactgtctgctgaggttcgggtgtgtaccgttctgactagggaaaccggaggaatctac
aacgtgatcctggacgagagccatttcaaggagctgctgacgttccacgtgaaccctcct
cccgccagctcatcctcggagtgctcgctcatccgcatgggtttccctcagcacatcatc
gcttctgcatctgatcaggactccaagccgtccttcagcatgtcgcacctggagagctca
gatgaaggaccaggcctcagtctcggtggttattattgcccccagtgcagagccaaatac
acagagctgcccgtggagtgtaaagtgtgtggtctgaccctggtctccgcccctcacctg
gctcgctccttccaccacctgtttcctctggaagcgtttcaggagcgccccctggaggag
cacacaggggacaggttctgccaggcctgtcaaggagagctgaaggacaaaagtgtgttc
acgtgtccggtgtgcgtgagcgtgttctgcgtggagtgcgacatcttcattcacgacacg
ctgcactgttgtccgtgctgcatccagagacagggagcgtcctga
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