Silurus meridionalis (southern catfish): 124381774
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Entry
124381774 CDS
T08004
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
smeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124381774 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
124381774 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124381774 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124381774 (gtf2h4)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124381774 (gtf2h4)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124381774 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
124381774
NCBI-ProteinID:
XP_046699592
LinkDB
All DBs
Position
29:8273704..8287590
Genome browser
AA seq
466 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPDILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDHPLP
QAAVALWVKKDSQKDHDQCVSVLTGLRLWHSQQLQGGLQGIVLNPVFKDNLRIALLGGGK
PWADEGSSLGPDRHARDIESLDRYAIDRWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKT
EAGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTVQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTARNSSSSSSSALT
SSTLTGDSGFIVVETNYRVYAYTDSELQIALVALFSEMLYRFSNVVVAQVTRESVQQAIA
NGITAQQIIHFLRTRAHPVMLKQTPILPPTITDQIRLWELERDRLQFTEGVLYNQFLSQA
DFEVLRDRAQGLGVLVWQNPQHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccgagtacaactgcagtgcaaaaaccttcatgaatacctgaaggaactgagt
cctgacattctcgaccgactgtacaaccacccagctacatgcctcgccgtttacagggag
ctcccgtctctggcaaagaattatgtgatgcgaatgctgtttctagatcaccctctcccg
caagcagccgtggcattgtgggtcaaaaaagacagccagaaggatcacgaccagtgtgtg
tcagttctcactgggctgagactgtggcacagccagcagctgcagggaggccttcagggc
atcgtgctcaacccggtgtttaaagataacctgaggattgcgctgctcggaggcggtaag
ccatgggcagacgagggcagcagtctcggccccgatcggcacgcacgggacatcgagagt
ctagaccgctatgccatagatcgctgggaagtcatcctgcacttcatggtgggctccccg
agcgcagcggtcagccaggatctcgctcagctccttatccaggccggcctcatgaagact
gaggctggcgaagcgccttgcatcacttcagctgggtttcagtttctgctactcgacacg
gcctctcagctgtggtacttcaccctgcagtacctcaaaacagtgcagtctagagggatg
gacctggtggaaatcctctccttcctgttccagctgagtttctccaccctcggaagggac
tattctgtcgagggcatgagtgagtctctactgacgtttctgcagcacttacgagagttc
ggcctcgttttccagagaaagaggaagtcaaggaggtattaccctactagactagccata
accctggctgcaggagttaccgccaggaattcatcatcctcctcttctagtgctttgact
tcttccacactaacaggagactctggtttcattgtcgtagaaaccaactatcgcgtgtac
gcttacacagactctgagctgcagatcgctctggttgctctcttcagcgagatgctctat
cgattttccaacgtggttgtggcgcaggtcaccagagagtctgtacagcaggctattgct
aacggcatcacagcacaacagattatccacttcctgaggaccagggcacatcctgttatg
cttaaacagacccccatacttcctccgaccattacagaccagatcagactctgggagctt
gaaagagatcggctgcagtttacagagggcgtattgtataaccagttcctgtcgcaggct
gattttgaggttttgcgtgacagagctcagggtttgggagtgctggtgtggcagaaccca
cagcacagggtcatggtggtgacgccacatggacacagtgaggttaagaggttctggaag
agacagaagagccacacgtag
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