Silurus meridionalis (southern catfish): 124382225
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Entry
124382225 CDS
T08004
Symbol
thrb
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124382225 (thrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124382225 (thrb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124382225 (thrb)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124382225 (thrb)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
124382225 (thrb)
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Ortholog
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PAP_central
ATG16
Motif
Other DBs
NCBI-GeneID:
124382225
NCBI-ProteinID:
XP_046700366
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All DBs
Position
29:complement(1044827..1121068)
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AA seq
512 aa
AA seq
DB search
MNYCVPDVYGMPHGMAGGYTVPGGGEYCMYAGDGSTFGHCEPQAIHHNPTCMEQPWPAGQ
PYPSMYPATYPGSNPAFKNEFCTTEVPLSHFQQPDYFSDCRPDFSQMQWIQVQHKKGYIP
SYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTR
NQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRKREELQKTVWDRPEPSQEE
WELIRIVTDAHMTTNAQGNHWKQKRKFLVEEAMLLNEITCNLFYTSDQSAVGVKETKAED
IGQGTIVSTPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC
MEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSE
VALLQAVILLSSDRPGLTSVDRIERCQEEFLLAFEHYVNYRKHKVAHFWPKLLMKVTDLR
MIGACHASRFLHMKVECPTELFPPLFLEVFED
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaattactgtgtgccggatgtgtatgggatgccacacggcatggctggaggctacacg
gtaccgggcggaggggaatattgtatgtacgcaggcgacggatccactttcggccattgc
gagcctcaggcgattcaccacaacccaacgtgcatggagcagccctggcccgccggtcag
ccgtaccccagcatgtaccccgccacttatccgggcagcaacccggcgtttaagaatgag
ttctgcaccaccgaggtgcctcttagccacttccagcagcccgattacttctcagactgc
aggccagacttttcccagatgcagtggattcaggtgcagcataagaaagggtacatacca
agttacctggacaaggacgaactttgtgtagtgtgcggagacaaagcgacgggataccat
taccgctgtatcacctgcgagggctgcaagggttttttcaggcgtacgatccagaagaac
ctgaacccgacctacgcatgtaaatacgaggggaaatgtgtaatcgacaaagtcacgagg
aaccagtgccaggaatgccgcttcaagaaatgcatcgccgtcggcatggcgaccgacttg
gtgctggatgacagcaagcgtctggccaaacggaagctgattgaggagaaccgtgagaag
aggaagcgcgaggagctccagaagacggtgtgggatcgaccggagccgtcgcaggaggaa
tgggagctgatccgaatagtcaccgatgcccacatgaccaccaacgcccagggcaaccac
tggaaacagaagcgcaaattcctggtcgaggaagcaatgctacttaatgaaataacttgt
aatttattctatacttctgaccagagtgcagtgggggtgaaggaaaccaaggcggaagac
ataggtcaggggacgatcgtgagcacgccagagggcagcaaggtggacatcgaagccttc
agtcagtttacaaaaatcatcaccccggccatcacacgagtggtggacttcgccaaaaag
ctgcccatgttctgcgagctgccctgtgaagatcagatcatcctgctgaaaggctgctgt
atggagatcatgtctctgcgtgcggccgtgcgctacgaccccgagagcgagacgctcacg
ctcaatggcgagatggcggtgacgcgcggccagctcaagaacggcggtctgggtgtggtc
tcagatgccatcttcgatcttggggtttctttgtcctccttcaacctggacgattcagag
gtggcgctgctacaagctgttattctgctctcctcggatcgtcccggattgacgagcgtg
gaccggatcgagcgctgccaggaggagttcctgctggccttcgagcactatgtcaactat
cgcaagcacaaggtggcgcacttctggcccaagctgctgatgaaggtgacggacctgcgc
atgattggcgcgtgccacgccagccgcttcctgcacatgaaggtggagtgtcccaccgag
ctgttccctccgctgttcctcgaggtctttgaggactga
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