Silurus meridionalis (southern catfish): 124383282
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Entry
124383282 CDS
T08004
Symbol
chd6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124383282 (chd6)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124383282 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
CHDCT2
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
124383282
NCBI-ProteinID:
XP_046701763
LinkDB
All DBs
Position
1:complement(9667681..9753430)
Genome browser
AA seq
2943 aa
AA seq
DB search
MKIQKKDKQMSATHILMHTSATSANTASEQNAQTTFSIGHFGKEQIRIIDGPSNHCVAHA
KLASMREVVQGSNSSSPHLSGSPVNSEEDDGGGGPRVRKKRKKKDKKDTREDRECDIRPK
KKKEQKEGKGLLLKKSKALKELKKTKKVEGKVAKDAKKVKKVQAVKSKTQGTDVTTTPRQ
RGRKPKEQSVVPLEKRKKGKRKSDAPQEAAESDDTASLCTLATGGEESTDHMDNTKRRSG
RQVKRRKYNEDLDFKVVDDDGETIAVLGTERIPALSSSTLAWQAEEPPEDEANIIEKILS
VRTAKKEVTFPGEPVEESEEFYVKYRNFSYLHCKWATLEELEKDPRIHQKIKRFRNKHAQ
MKHIFSELDEDLFNPDYVEVDRVLEIAITTDTETGEEVTHYLVKWCSLSYEESTWELQED
VDPVKIREFEELKKIPELTPVERPSPEQWQKLEQSREYRNGNQLREYQLEGMNWLLFNWY
NRKNCILADEMGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNWEREFRTWTEINVV
VYHGSQISRQMILQYEMYHRDEQGNITPGFFKFHGIITTFEMIMADCPELKKVNWRCVVI
DEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPVQFPSESTFLE
EFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEK
NFTFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILDSFRKTHNPDAPDFQLQA
MIQAAGKLVLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL
RQAAIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG
QRKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQLSKMEVEDLLR
KGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQTEGKGSTFAKASFVSSGNRTDISL
DDPNFWQKWAKIAELEIDSKEEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEE
RPCRSRRLGERNKRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLTERDMEVLCRAL
LAYCVRHYRGDDKIKSFIWDLITPTKDGHNQALQNHSGLSVPVPRGRKGKKIKNQLSPPE
LKNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEILGEAASQALEEVSA
SKLDVSLPEIDYIEIPTGWWDSEADKSLLIGVHKHGYERYNAMRADPQLCFLERVGMPDA
IALTAEQGGAEVAPDVTDSVSKNDDIKEVVDGKPEEIEAKEDKKVMIKCQENTLSEDTVK
HDCSIEATRPDILAEEVVEQGQALWPTASALTARLRRLITAYQRYTRREPFRHEILMHEG
IGPATWQMGDELRRCMTNSDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEKKVFDWSQ
FRIFARLERKTDESLERYFWSFVSMCRTACRLPPRKDEGLVDPSLCIEPITEERAARTLY
RIELMRKVREQVLNHPLLGERLKLCRPSLYLPVWWECGKHDRDLLTGVAKHGLSRTDFCI
LNDSNLSFLEAYRNYMQKENRGNPVLCLPHQHCYLGHCHSPQPSEYHHTLLHSTQLHQHM
HSHVHQASEVVAAASESESTLTIPANSRESFLDCPTINDPLDLGSLQHEGLSSGSLHSKT
SKEPFNGFPFNSASAGQSMLNSYDVQGDITGAQGDMTDSIDGKLRNDVLVGEQGSSEETG
LMAPSVELDELQTPWGSSDHAETSDILGDPILVEPSLETEFLDPAQSDDGQERGDPLTGC
LSIPSSDSQSDHVEPLAPSFMLFKDLNTGETSMEQPDLSASPPEYVASQPLALSDVGIDQ
SGSINVELETKLNDSDITHCNTSSVHRPDHVVYEFKDEETSQGGSSNRKLTRLNEIESKT
NNLTSIDTLMENQLEPLKVECSMPSEEQLKDDCQVFLEESCEKLLLEQDKVPLTEPYEIP
CKGTLEELLDGSPQSSSVKLLVKEASGKPLENSSELVVNSPANPTLSPDTLPSSLPLFPT
FPNPVPDHSVFPEPETEQNIKQELLLDSLETQVKPKPDSTTRTPHLEQAADSEVKDEIKE
EETKTAALLADSFVEPPQFDPSICEVVGTLQDPKEPTIARLLQEKAHYSFSEWPKDRVII
SRIDSICQAILKGKWPSTSQQYESPNSAVNTCMSNSAQLRAGYLSARMPLPQDLNLNIPH
SIPHIHKERLVTPAFLSEVKHSKCGFEFNTEVPVKPIDVGEKIQLGIPHHGSTLLLNGWQ
EAAMDLSKPTEIAFGREAESLRHVSHAVQSASHKVANLSSMEGLMGLDMAGILQAGLVHP
VTGQIVNGSLRRDDSIMRRRRGRRRNVETLDLGLMKEREIDLNRSKGQPETINHPIVSST
SSQPDCPTHSSSVPSPSDSLTMSVDREAAGKSLMEWLRQNPSYRMELPAFSTSQTASMLQ
SFAERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRNTGRRLGGAMAPAIKELSQWLDANL
EYFVAPDWADVVKHSGFLPEGKFTRILTEPVNRDPNTRRRGRRPRSEMPKAPDLPAGIGP
LFLNDGLIGMDLVNLPSLRNVPGIPIGGLMGFPPGLAAALPGEDAKNGLSMLPMMLHSMS
AVQSPIYGAHLGGMINQSLSATASTVTTSASSSSTATVTSISSAAVALSPSPAVSSSTAA
SKERASPEPNDERLGTDERTLGENEKKILSAVPSSNVSSSTASITSSGSHLAFNPFLITG
MPHGLLYPHMFLPHGSIMALPSASDSTGIIKQKKKKIRDEGIVDEDNGLLVVHDGKTKGM
RDVETLECKHKEGRLEESMSAVDTSKVTSNDPPSVVSTAKAVEETKEEVEKTIEDDLGET
QDV
NT seq
8832 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacaaaagaaggacaagcagatgtctgccacgcacattttaatgcacacttca
gcaacttcagccaacactgcctcagagcagaatgcacaaacaactttttccataggccac
tttggcaaggagcagatccgcatcatcgatgggccatctaaccactgtgtggctcatgca
aagctcgccagcatgagggaggtagtccaaggatctaacagctccagtcctcacctttct
ggttcacctgtcaatagtgaggaggatgatggaggaggtgggcccagggtgaggaaaaaa
cgcaaaaaaaaagacaagaaagacacaagagaggacagagagtgcgacattagaccaaag
aaaaagaaggaacagaaagaaggaaagggcctgctcctgaagaaatcaaaagcactgaag
gagctaaaaaagacaaagaaggtggaagggaaggtagcaaaggatgctaaaaaggtcaag
aaagttcaagcggtcaagtcaaaaacacagggaacagatgtgacaaccacaccaaggcag
cgcgggaggaagccaaaagagcaaagtgttgtccccctggagaaaaggaaaaaagggaag
cggaaaagtgatgcaccacaggaggcagctgagagtgatgatacggcctcactttgtaca
ctggctacaggaggcgaagagagcacagatcatatggacaacactaagaggagatcaggg
cgtcaggtgaagcgtaggaagtacaatgaagatcttgattttaaggttgtggatgatgat
ggcgagaccattgctgttttgggaacagagagaattcctgctctctcctcctctaccctt
gcttggcaagcagaggaacctcctgaagatgaagccaacataattgaaaagattctctca
gtgcggactgctaagaaggaggtgacattccctggagaaccagttgaagagtcagaggaa
ttttatgtgaagtacagaaatttttcctatcttcactgtaaatgggcaacattggaggag
ctggaaaaggacccacgcattcaccaaaaaatcaagcgcttcaggaacaaacatgcacaa
atgaagcacattttctcagagctggatgaagacctctttaatccagattatgttgaagta
gatcgggttttagagattgcaatcactacagacacagaaactggagaggaggtgacgcac
tacctggtaaagtggtgttctctgtcctatgaggaaagcacttgggaactgcaggaggat
gtagaccctgtgaagattcgtgagtttgaagagctcaagaaaataccagaactcacacct
gttgagaggccttcaccagaacaatggcaaaagcttgaacagtctcgtgaatacagaaat
ggcaaccaactcagagaataccagctagaaggcatgaactggcttcttttcaactggtac
aataggaaaaactgtatccttgccgatgaaatgggccttggaaaaaccatccagtccata
acattcctctatgaaatattccttatgggtttgagaggtcctttcctaatcattgctcct
ctctccaccattacaaattgggagagagagtttcgcacatggacggagattaatgtagtt
gtttatcatggtagccagatcagccggcagatgatcctgcagtatgaaatgtatcacaga
gatgaacagggaaacataacgcctggtttttttaagtttcatggtataatcaccacattt
gagatgatcatggctgattgccctgaactgaaaaaggttaattggcgctgtgtggtgatt
gacgaggcccatcgattgaagaatcgtaattgtaaactactggaaggacttaaactcatg
aacttggagcataaagttctccttacagggacaccactacagaactctgtggaggaactc
tttagcctcctcaacttcttggagccagtgcagtttccgtcagaaagcacattcctcgag
gagttcggagatctaaaaactgaggagcaggttaagaagcttcaagctattttgaagccc
atgatgttgaggagactgaaggatgatgtggagaagaatttggcccccaaagaagaaaca
atcattgaggtggaactcactaatatgcagaaaaaatattatcgggccatcttggagaaa
aactttacctttctggcaaagggagccaaccagcacaatatgcccaacctcattaatact
atgatggagctacgcaagtgctgcaatcatccatatctcatcacaggtgctgaagaaaag
atactggatagctttaggaaaacccacaatcctgatgcaccagatttccagctccaggct
atgattcaagctgctgggaaattggtccttattgacaagctgctgcccaaactcattgct
gggggacataaggtgttggtattctcccagatggttcggtgcttagatattctagaggac
tacctcattcagagaaggtacacatacgagcgcattgatggaagagtcagagggaatctg
cgacaagcagctattgatagattttgtaaggtggactctgaccgttttgtcttcctgctg
tgcacaagagctgggggactgggcatcaatcttactgctgcagatacttgcatcatattc
gactctgattggaacccacagaatgacctgcaggctcaagctcgctgtcatcggattggc
cagcgcaaagctgtgaaggtttatcgtcttattactcgcaactcatacgagagggagatg
ttcgacaaagccagtctgaagctgggtcttgacaaggctgttctacaggatatcaaccgc
aaaggcagtctaaatggggtacagcagctatctaagatggaagtggaagatctcttaaga
aaaggtgcatatggtgctcttatggacgaagaagatgaaggctcaaagttctgcgaagaa
gatattgatcagattctgcaacgccgcactcaaaccatcaccattcagactgaagggaag
ggttcgacttttgctaaggccagctttgtttcttctggaaaccgaacagacatctctctt
gatgacccaaatttctggcagaaatgggctaaaatcgctgagctggagattgactcgaag
gaagagaaggagagtcttgtgattgatacacctcgtgtgcgcaaacaaacacgacactac
aactcgtttgaggatgatgagttgatggaattctcagagctagacagtgactcagaggag
cgtccctgtcgctcacgacgccttggcgaacgcaacaagcgatatctccgagctgaatgc
ttccgagtggagaagaacctgctcatatttggatgggggcggtggaaggacatcttgaat
catggacgctttaagtggcaccttactgaaagagacatggaagtcttgtgcagagcactg
cttgcctactgcgttcgtcactacagaggtgatgacaagatcaagagcttcatctgggat
ttaatcacacctaccaaggatggtcacaatcaagcactccaaaaccactcaggattatcc
gtccctgtaccccggggacgtaagggtaagaaaattaaaaaccagttaagtcctcctgag
ctaaagaatgctgattggctagtccactgtaatccagaagtagtactccaggatgacagc
tacaagaagcacctcaaacagcactgtaacaaggtgctgctgcgggtacggatgctgtat
taccttaaggcagagatacttggggaggctgccagtcaggccttggaggaagtctcagcc
agcaaactagatgtgtccctgcctgaaattgactacatagaaatccctactggttggtgg
gattctgaggcagataagtctctgctcattggagtacataaacacgggtatgagcggtac
aatgccatgcgtgcagatccccagctctgtttcttagagcgggtgggcatgccagatgcc
atcgcacttacagcagaacagggtggtgctgaggttgcaccagatgtaactgacagtgtg
agcaagaatgatgatataaaagaagtagtagatggtaagccagaggaaatagaggccaaa
gaagataaaaaggtgatgatcaaatgtcaggaaaatactctctcggaggacacagtgaaa
catgactgttctattgaagcaactcgtccagatattttagctgaggaggtagtggagcaa
ggtcaggcactatggccgacagcgtctgcccttacagcaagattacgacgccttatcact
gcctatcaacgctacacacgacgtgaaccgtttcgacatgaaattctcatgcatgagggc
attgggcctgctacctggcaaatgggtgatgagctaagacgctgtatgacgaattctgat
ccacttttccttgagtggcaaagaaggtggacacgtcgtgagcaggctgatttctatcgc
actgtgtcttcatttggggtggtgtatgacccagagaaaaaggtttttgactggagccag
ttccgtatattcgctcgtttggaaagaaaaactgatgaaagtttggagagatatttttgg
agctttgtgtccatgtgtcgtactgcctgcagactgccaccaaggaaagatgaaggtctg
gttgacccaagtctttgtatagaaccaattactgaagaacgagccgctcgtacattgtac
cgcattgagctcatgagaaaggttcgtgagcaggttttgaatcacccactcttaggggag
cgattaaaactgtgtcgaccaagtctttatttgcctgtgtggtgggaatgtggcaaacat
gatcgtgatcttctcactggtgtagccaagcatggccttagccgcaccgacttctgcata
ttgaatgattctaatttgtctttcctggaggcctaccgtaactacatgcagaaagaaaac
cgtggaaacccagtgttatgcttgccccatcagcactgctatctagggcactgccattct
cctcagccctcagagtatcatcataccctcttacactccacacaattacaccagcacatg
cattcacatgttcaccaagcctcggaagtagtagcagcagcatcagaatcagaaagcact
ttgactatacctgcaaactccagggaaagcttcttggactgccccaccattaatgaccct
ttggatcttgggtctttacagcatgaaggcttgtcttccggctccctccatagcaaaact
agtaaagagcccttcaatggatttccatttaattctgcttcagctggtcagagtatgtta
aattcatatgatgtacaaggagacattactggggcacaaggagatatgactgactctata
gatgggaaactacgaaatgatgttcttgtgggagaacaggggtcctcagaggagactggg
ttaatggccccttcagttgaactagatgaacttcagactccatggggaagctcagatcat
gcagaaacatctgatattttgggtgatccgatcttggtagaaccttcacttgaaacggaa
ttcctggaccctgctcagtctgatgatggacaagaaagaggggatccacttacaggctgt
ttaagcatacccagttctgactcacagagtgatcatgtagaaccactagcaccaagcttc
atgttgttcaaggatttaaatactggagagacatccatggaacagccagatttatctgcc
agtccacctgaatatgttgcttcacaacctcttgcactttcagatgtaggcattgatcaa
tcaggatccattaatgtggagctagaaacaaagctgaatgattctgacatcacacattgt
aacacaagttcagtacatagaccagatcatgttgtatacgagtttaaggatgaggaaact
tcccaaggaggcagtagtaacaggaaactgaccaggctaaatgaaattgaaagcaaaaca
aataatttgacctctatcgacactttaatggaaaatcagttggagcccctaaaggtagag
tgcagcatgccaagtgaggagcagctgaaggatgattgtcaggtgttcttggaagaatct
tgtgaaaaactcctattggagcaagataaagtgccattaacagaaccttatgaaattcct
tgcaaagggaccctggaggaactgcttgatggatcccctcaaagttcgagtgtaaaatta
ttggtaaaagaagcttctggaaaaccccttgaaaattcttcagaactagtagtgaatagt
ccagccaaccccacactctcccccgacactttgccttcttcattacctttgtttcccact
tttcccaacccagtaccggaccactctgtgttcccagaacctgagactgaacagaacata
aaacaggaattactcttggattcattagagacacaagtaaaacccaaacctgacagcaca
acacggaccccacacttggaacaggctgctgactcagaagtaaaggatgagataaaagaa
gaagaaacaaagacagcagctttattggcagatagttttgttgagccaccgcagtttgat
ccatccatatgtgaggtggtaggcactctgcaagatccaaaggagccaacaattgctagg
ctgctacaagagaaagcccattactcgttctccgagtggcccaaggacagagttatcatc
agccgcattgacagtatttgccaagccatcctaaaggggaagtggccatccaccagtcag
cagtatgaatcacccaactcagctgttaacacctgcatgtccaacagtgcccagctaagg
gcaggttatttatcagcaagaatgcctctacctcaagaccttaacttgaacattccacac
tcaataccccatatacacaaggaacggttagtaacacctgcatttctttctgaagtcaag
cattcaaagtgtgggtttgagtttaacacagaggttcctgtcaaaccaattgatgttgga
gaaaaaatccaacttggcattccacatcatgggagtactctcctcctaaacggttggcaa
gaagctgccatggatctgtctaagccaacagaaattgcatttggtagagaggctgaatct
ttgagacatgtgtcccatgctgtccagtcagcatctcacaaagtagctaacctgagctcc
atggagggcttaatgggattggacatggcaggtattctgcaagcaggacttgtgcaccct
gttacagggcagattgttaatggtagccttcgtcgtgacgattcaataatgaggaggagg
agaggtcgaaggagaaacgtggaaacgcttgaccttggattgatgaaggaacgagaaata
gacttaaatagatcaaagggccagccagagaccatcaaccaccccattgtgtcctccacc
tcctctcagccagactgccccacccactcctcttctgtcccctctccatcagattcactc
actatgagtgttgacagagaggcagctggtaaaagcctgatggaatggctcagacaaaac
ccaagttacagaatggagcttcctgcattttcaacgtctcagactgcaagcatgctgcag
agttttgctgaacgtccaaagcaaaggaggcatcgctgtaaagaccctacaaagctggat
gtcaattccctaactggagaggagagagtcccagtagttcacaggaacacaggtcgcagg
cttggtggtgcaatggccccagccattaaggagctctctcaatggctagatgcaaaccta
gaatactttgtggctcctgactgggcagatgttgtgaagcattcaggtttccttccagaa
ggaaagttcactcggattctcactgagccagtgaatcgcgatcctaacacacgtcgtaga
ggcagaagaccccgcagtgagatgcccaaagctcctgatcttcccgctggaattggacca
ctgtttttgaatgatgggcttattggcatggacttggttaatttacccagccttcgcaac
gtgccgggcattccaataggtgggcttatgggctttccacccggtttggctgcagccctt
ccaggagaggatgctaagaatggcttgagtatgttacctatgatgctccacagtatgtca
gcagtgcaatcacccatatatggcgctcatttaggtggaatgattaatcagtcattatct
gctacagcctccacagtaaccacatctgccagctcctccagcacggcaacagtgacttcc
atatcctctgccgctgtggccttaagccctagccctgcagtcagctccagcacagcagct
tctaaagagagagccagccctgagcctaatgatgagagactgggcacagatgagagaaca
ctaggagagaatgagaaaaaaatattatctgctgttcccagctccaatgtttctagcagt
actgctagcattacaagcagtgggagccatttggccttcaacccctttttaatcacagga
atgcctcatggattactgtatccccacatgttcctgccacatggcagcattatggcactt
ccatcagcatcagatagcactggaattattaagcagaagaaaaagaaaattagggatgaa
ggaattgtggatgaggacaatggtttattggtggtacatgatgggaagacgaagggaatg
agggatgtagagacactggagtgtaagcataaagagggcagactggaggaatctatgtca
gctgtggacaccagtaaagttacaagtaatgaccctccatctgtagtcagcacagccaaa
gcagtagaggaaacaaaagaagaggtagagaaaacaatagaagatgacttgggagaaaca
caggatgtgtag
DBGET
integrated database retrieval system
