Silurus meridionalis (southern catfish): 124383806
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Entry
124383806 CDS
T08004
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124383806
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124383806
09142 Cell motility
04820 Cytoskeleton in muscle cells
124383806
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124383806
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124383806
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124383806
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124383806
Hyaluronan
Extracellular matrix or blood plasma proteins
124383806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
124383806
NCBI-ProteinID:
XP_046702087
LinkDB
All DBs
Position
4:complement(27418670..27467477)
Genome browser
AA seq
2751 aa
AA seq
DB search
MITEAMEKFKGLLHLFIFASSILMCCPQKTADIVFLVDGSWSIGTENFPKIRDFLFTFVN
SFNVSPNEVQIGLVQYGDSPHTEFYLNSSETKLKILDYITKLPYRGGGTKTGLGLTLLLK
QHFVKEAGSRAENGVPQIAVVITGGQSEDNVKVHAQDLKHKGIIAFAIGIKDANKDELKE
IASKPHEEHIYIVPDFIALQGNTQRFIQFLSTSLEGPKFPVSQGCKTILADIVFLVDSSS
SIGDADFRKVKKFLQTFLVGLDVKPDKVRVGLAQFSNDPKQEFLLGEYVDKNNLLEKVEK
LTHLKEDTEIGKALTFIQNNYFTEAGGSRLNQSVPQIAVVITNGDSADEIEIPAMELRRK
GVLIFTIGVGEASITALQSIANKPHQHFVLSFTDYEELLKATTRTVDKVCISVEAQQQAL
VPKFADVFVLVDSSVEQQKVIELLIRIANQLNVSSLSNRLALAQFGEDVSVDFRFDGYKT
KKEALALIRKFQLKSPGQQRKLGKAMDYVRINLFNSAAGSRIAKGYKQYLLVVSKGESDD
NILKAVRALKDQGVILVNIDLSEVTDSELITIPSEPDISGESIQPGLSARYSPIVPLPPI
VYSAAGDIQQIAESAVTILGSKDELSTAQECKSLADIVFIVDVSDSTRHPDLVRFFLSRI
INLLQLESDCMRLGIVLYSETPSADFYLNSFKSKSEILQYIKGLPFGGGESKPSKALKFA
REKMFAKELGSRYAIEAEQIAVVITEVKSLDNEATAEAASLKRSGVQVYAIGVSDDNKEQ
LKQIASYPSTKFVLSLQSFSNIYKVEKTLRGAVDHSTVHSHLKTRNFDLKQGCVQTEKAD
IYFLIDESTSIDEKDAQDIKNFILYFISMFSIGPKQVRVGVVKFAEEPVLEFRLDAYNDK
SSLDKAVNNIKHGSGDTFIGKALSSMIKYFEEAKKTRGTEVRSILIVLSDGDSWDEVVLP
AAKLAAQGVSTYAVGINENEDSKLSQIVDNPKRRFSITNYHALTDLKEKIVSRICLEDAC
TSMWADIIFLVDGSGSTTPEDFLKIKEFLQTAVSLFIIDKDSVQVGVVKFDPNPKTEFAL
NTFSDKKQMLQAINKMQQQKQPIKSMKQLEKGSKIGAALNFVSEYFDQSKGGRLNAPQFL
IMLTNGRSMDDVAQPAEAIRNKSITIYSIGVGDSSTSQLREISGTQDIFFLEKDDEMLEF
LDTVLSLKSANLLKVSHTNIILFCQKSQVADVVFLVDGSTSILSTNFERIKFFMISIVNS
TQVGQNNVRICTIVYSNVPKIQFRLNDYHSKEEVQNAVSALHYPTGDTYTTKALKYSVDY
FHETNGGRRASGVPQMMFVITDGEATDPHGLEDAANKLHRFGVSLYGIGVANASIDELEK
ITKDKNKIFHVNNFQALNNLWQNISNEICKETKPECQKEAADLVILIDGSEKTGGDLWNS
MQNFTMGLVDNLRIKPHLFRVGVAQFSTTYRKEFYLNEYCSEEKVKGAIKKMTPMKKKRN
IGFALNKVKEFFNTNNGSRIEEEIPQYLLLITVGTSSDNYTDAAVELRTMGIQIIAIGTT
EKIETQLNSITGSKKKVFIFDSFHPRIVNQTTQQLVNGICDTTPSDITASCTVNIGVGFD
ISHSSLSSQSLFSSQYLLQRYLSEIISQISTLHNLCCLPKQPALQTNIGFRLVTSDGRTL
YDTSFEHYSDEIIKKVKALRMTQGVAFNTQLLRSFQDKFESSRSGVKVLIIFSDGLDEPV
DDLVAASNNLRRSGVHALIPVALEGFKSSITDLQKLQYGRGFEYREPIMIGIQNVASVLQ
KQIDNVASRECCNVMCKCTGDEGVRGHGGPQGTKGSPGQQGSRGFPGEEGEPGKRGPSGL
NGTQGFQGCRGNRGLKGNRGYTGETGEHGECGLDGVNGEQGVVGLAGAPGQRGEPGIQGK
KGVRGIPGFPGQKGLRGDPGETGSDNNRRGPKGELGYPGLQGDTGPDGSPGSPGDAGNRG
QKGRRGASGLPGARGPQGQSGPQGISGPSGSLGPMGPSGSLGQKGISGFPGPQGLPGTQG
NTGPKGNVGPRGQKGQPGEPGNKGTAGPQGPRGPPGNDGQDGFGLAGPKGLKGDPGFPGH
PGFQGEPGDPGRNGDNGPKGLRGREGSAGGMGTPGNPGSIGPPGHKGPKGPPGTMEMSTC
QLISYIRNNCGCCKDKAACPVYPTELVIGLDMSDDVSSPLFERMRSTLLSLLGSIDITES
NCPQGTRVSVVSYNSNTKHLIRFSDHRRKKDLVEAVKNIPLERTSNRRNIGAAMRFVGRN
VFKRIRQGVLIRKVAIFLSGGQSQDVTSIITAVLEYKALDINLGVIGFRDTPNVRRAFEA
DETGSFILSVVETSDTQNAALEKIQRCVICFDLCNPAIGCPNTSAASTSKEVNMDLALLV
DGSRNIQADQYEGVKQVLGTLLDQLVVSAQPSKVDGQARVALYQQSSSYSEVQAPVKQIF
TFQQFQNRNLMKQRIFENLQQTGGYSRLGQAMEFVILKNLFTVSKPRKYKMLLLIVGGET
EYSDREKLDFISRMAKCQGVVLCTLAVGDNFNSTQVEEIASFPTEQHIVHLGHVKQGEQE
YARRFIRTFLHILSRQMNTYPSPLFKQQCKSLQQQQGQGKGPVLDVFEAVKRPPINRFPL
TGSTYTEVTEKEFVEEIEEETEFSEQRGPQMETEYRNEDGLFLGPGMSNATDMCYLKKND
GPCTNFVLKWFYDQNKNQCIQFWYGGCDGNLNRFDSKEQCETRCVDLHTLQ
NT seq
8256 nt
NT seq
+upstream
nt +downstream
nt
atgatcactgaagccatggaaaagttcaaaggactgctgcatctgtttatttttgcttca
agtattcttatgtgctgtccacaaaaaacagctgatattgtcttcctggttgatggttct
tggagtattggcacagaaaacttcccgaagatccgtgatttcctcttcactttcgtaaac
agttttaatgtgagtcctaatgaggttcagattggcctagtgcagtatggtgactcaccc
cacactgagttctaccttaacagttctgaaaccaaactgaagattcttgactacatcaca
aagctcccataccgtggaggtggcaccaagactggactagggttaactttacttctaaaa
caacattttgtaaaagaagcaggaagtcgtgctgaaaatggggtgcctcagattgctgtg
gttatcacaggtggacagtcagaggacaatgtgaaggtgcatgcacaggacttgaagcac
aaaggaatcattgcctttgccattggtattaaagatgccaataaagacgagctaaaagaa
attgctagtaagccacatgaggagcacatctatattgtgcctgatttcatagctttgcaa
ggaaacacacagagattcatccagtttctctctacaagtttggagggacccaaatttcca
gtgtctcaagggtgcaagactattttggctgacattgtgttcttagtggatagttctagc
agtattggtgatgcagacttccggaaagtaaagaagttcctgcagacattcctagtgggt
ctcgatgttaagcctgataaagtcagagtaggacttgcacagtttagcaatgaccctaaa
caagagttcctgttgggtgaatatgtggacaagaataacctgctggagaaagtggagaaa
ctcacccacctgaaagaagacacagaaattggaaaagctctcacttttatccaaaataat
tactttactgaggcaggtggcagtcggctcaatcagagtgtgcctcagattgctgtagtg
atcacaaatggtgactctgctgatgagattgagattccagccatggagttacggagaaag
ggggtgttaatttttaccataggggttggtgaagccagcattacagccttgcagtccatt
gccaacaaaccgcatcagcattttgtgctcagtttcactgactatgaggagcttctgaaa
gccaccacaagaacagtagacaaagtgtgtatttctgtggaggcccagcaacaagctcta
gttccaaagttcgcagatgtgtttgtgttggtggacagctcagttgaacagcaaaaggtg
atagagttgctaattcgaatagccaatcaacttaacgtgtcaagtctatctaatcggctg
gctttggctcagtttggtgaagatgtttcagtggattttcgttttgatggttacaaaaca
aaaaaggaagcacttgcacttatccgcaaattccaactaaaaagccctgggcagcagcgc
aaacttggaaaagcgatggattatgtgcgcatcaatcttttcaacagtgcagcaggtagc
cgaattgctaaaggttataagcagtacctgctggtggtaagcaaaggagaatccgatgac
aatatacttaaagcagttcgtgcattaaaggatcagggagtgatccttgtcaacattgac
ctaagtgaagttacagattctgaactcattacaatcccttctgaacctgatatatctggt
gaatctatacaacctggcttatctgccagatattctcctattgtgccattaccaccaatt
gtctattctgcagctggagacattcaacaaatagctgaaagtgcagtgacaatattgggt
tctaaggatgagcttagtacagctcaggagtgcaagtcactggctgatattgtgtttatt
gtggatgtgtcagacagtaccagacatccagacttggtccgttttttcctcagtcgcata
attaatcttttacagttggagtctgactgtatgcgtttgggaattgtcttgtacagtgaa
acaccttcagctgatttttacttaaattcatttaaaagcaagtctgaaattttgcagtac
attaaaggattgccatttggtggtggagagtccaaacctagcaaggctctgaagtttgca
agagagaagatgtttgccaaagagctgggcagccgatatgccatagaagcagagcagatt
gctgtggtaataacagaggtgaagtccctggataatgaagcaactgcagaagctgctagt
ttaaaacgctctggagtacaagtctatgctattggagtctccgatgataataaagaacag
ttgaagcaaatagcatcttatccttcaacaaaatttgtgctcagtctccagagcttttct
aatatttataaagtggaaaaaactttgaggggggctgttgatcacagtacagtccattca
catttgaagaccaggaattttgatttaaaacaaggatgtgtacagacagaaaaagcagac
atctatttcctcattgacgagtccactagtattgatgaaaaagatgcacaggatattaaa
aacttcattctttacttcatatcgatgttttctattggaccaaaacaagttcgtgtaggt
gtggtaaaatttgcagaagagcctgtactagagtttcgtctagatgcatataatgacaaa
agctctcttgataaagctgtgaacaacattaaacatggcagtggagacacctttatagga
aaagccctctctagcatgataaaatactttgaggaagccaaaaagacaagaggcactgag
gttcgcagtatcctcattgttctatctgatggagattcttgggatgaagtagtcctacca
gcagcaaagttagcagcacagggggtgtcaacatatgctgttggtataaacgagaacgag
gactcaaagctatcgcaaatagtagataatccaaagagaaggttttcaatcaccaactat
catgcactgacagaccttaaggagaaaattgttagtaggatttgcttggaagatgcctgt
acaagtatgtgggcagacatcatttttttagttgatggctcaggaagcactacccctgag
gacttcttaaagataaaggaattcttgcaaactgcagtgtcattgtttataattgacaag
gatagtgtgcaagttggagtcgtgaagtttgacccaaacccaaaaactgaatttgccctc
aatacgttttctgataaaaaacagatgctgcaggccattaataagatgcagcaacagaag
cagccaattaagagtatgaagcaactggaaaaaggatctaagattggggctgccctcaat
tttgtgtcagagtattttgatcaatcaaaagggggacgtttaaatgccccacagttcctc
atcatgttaacaaatggcaggtcgatggacgatgttgctcagcctgcagaagccatcaga
aataagagcattacaatatattccataggagtgggtgattctagcacctcacaactgaga
gagatcagtgggactcaggacattttttttctggaaaaagatgatgaaatgttggagttc
ttagatactgtcttatcgctaaaatctgcaaatcttctaaaggtaagccatactaacatc
attttattttgccagaaatcacaggtggctgatgttgtattcttagtggatggttcaacc
agcattctgtctacaaactttgaaagaattaagttctttatgatctcaatagtgaacagc
acacaggttggacaaaacaatgtccgtatatgtacaattgtctattcgaatgtacctaag
atccagttccgccttaatgattaccacagcaaagaagaggtgcagaatgctgtcagtgct
ctacattatcccactggggatacctacacaaccaaggcactaaagtactctgtggattac
tttcatgaaaccaatggtgggagacgtgcaagtggtgtcccacagatgatgttcgtcatt
actgatggtgaagccacagatccacatggattagaggatgctgcaaataagcttcacaga
tttggagttagtttgtatggtattggagttgcaaatgcaagtatagatgagctagagaaa
atcaccaaagacaagaacaagattttccatgttaacaactttcaagctttgaacaacctt
tggcaaaacatttcaaatgagatctgcaaggaaacaaaaccagagtgccaaaaagaggct
gctgatttggtcattttgattgatggttctgaaaaaaccggaggagatttgtggaacagc
atgcaaaattttacaatgggtcttgtagataatcttcgtatcaaaccacacctctttaga
gttggtgttgcccagtttagtacaacatacagaaaggagttttacttgaatgaatattgt
agtgaagagaaagtaaagggggccattaagaaaatgaccccgatgaaaaaaaaaagaaac
attggatttgcactaaacaaagtaaaagagttctttaacaccaataatgggagccgtatt
gaagaagaaattccacaatatctacttttgatcactgtcggaacttcatctgacaattat
actgatgcagcagttgagttaagaaccatgggaattcagataattgctatcggaacaact
gaaaaaatcgaaactcagctcaatagcattactggttcaaaaaaaaaagtgtttatattc
gacagttttcaccctcgcattgtgaatcagactacacagcagttggtaaatgggatttgt
gatactactccaagcgatataacagcaagctgcactgtaaatattggagttggatttgat
atctcccatagtagtttaagctcacagtcactctttagtagtcaatatctgctgcagcgc
tacctgtctgagattatcagtcaaatttccactctgcataacttgtgctgtctacccaag
cagcctgctctacaaaccaacattggattccgtttggttactagcgatggtagaacactg
tatgatactagttttgagcattacagtgatgaaataataaagaaggtaaaagcattgcgg
atgactcagggtgtggcctttaacacccagctcctgcgctcttttcaggataagtttgaa
agctctagatctggtgtgaaggtattgatcattttctctgatggcctggatgaacctgta
gatgatcttgtggctgcctcaaataatcttagaagaagtggagttcatgcactgatacca
gtagctctggaaggattcaaaagcagcatcacagacctacaaaagctgcagtatggacga
ggatttgaatacagagagccaatcatgattggcattcaaaatgtagccagtgtcttgcag
aagcagattgataatgtggcttcacgagagtgttgtaatgtgatgtgcaaatgcactggt
gatgaaggggtgcgaggacatggaggacctcaagggacaaagggctcacccgggcagcaa
ggatcccgtggatttcctggagaagaaggagaacctggaaagagggggccatcgggtcta
aacggaacccagggatttcaaggctgccgtggaaatagaggcctaaagggtaacagaggc
tacacaggcgaaacaggagagcatggagaatgtggtttggatggtgtaaatggagagcag
ggggtagttggattagcaggagccccaggacagcgaggggaaccaggcatccaaggcaag
aagggtgttagaggaataccaggattccctggacaaaaagggctgagaggagatccaggt
gaaacaggcagtgacaacaatagacgtggtcccaagggtgaacttggataccctggccta
cagggtgacacaggtccagatggcagtccaggttctcctggggatgctggcaatcgtggt
caaaaaggaagaagaggcgcctcaggtctaccgggtgccagaggacctcaaggacagtca
ggaccacaaggaatctcaggaccttcaggatcactgggaccaatgggtccttctggatct
cttggacagaaagggatatctggttttccaggaccacagggactacctggtacacaagga
aacaccggacctaaaggaaatgttggacccaggggacaaaagggtcagcctggggaacct
ggaaataaaggaacagctggaccacagggtcccagaggcccaccgggtaatgatggtcaa
gatggatttgggttagcaggacctaaaggactgaagggagaccctggatttccaggacat
cctggatttcagggtgaacctggagatcctgggagaaatggtgataatggccctaagggt
ttaagaggaagagagggtagtgcaggtgggatgggaacacctggaaatcctggcagcatt
ggaccacctggacacaagggccctaaaggacccccaggaactatggaaatgtctacttgt
caactgattagctacatcaggaacaactgtggctgctgtaaagataaagcagcttgccct
gtctacccaactgaactggtgattggtctggacatgtctgatgacgttagttctccatta
tttgaaagaatgcgctcaactcttctttctttgctgggcagcattgatatcactgaaagc
aactgtccccaagggacacgagtgtctgtggtctcttacaactctaacaccaagcacctc
atacgtttttctgaccatcgccgtaagaaagatttggtggaagctgtgaaaaacatccct
ctggaacgtacctccaacagacgcaacataggtgcagctatgcgctttgtgggtagaaat
gtttttaaacgtattcgtcagggtgttctgatcagaaaggtggcgatcttcctctctggt
ggacagtcccaggatgtgacctccataatcacagctgttttagaatacaaggctctggat
ataaaccttggtgtcattggatttagggacactccaaatgttcggcgtgcttttgaggct
gatgagactggaagttttattttgtcagtggtggaaacatcagatacccagaacgcagca
cttgagaagatccagcgatgtgtcatctgctttgatctatgcaatccagctataggttgt
ccaaacaccagcgcagcttctacttcgaaggaggtaaacatggatctggctttgttggta
gatggttcccggaacatccaggctgatcagtatgagggcgtaaagcaagtgctaggcaca
ttgttggaccagcttgtagtgagtgctcagccaagtaaagttgacggacaggcacgagtg
gcactttaccagcaaagctcatcatatagtgaggtccaggctccagtcaagcagatcttt
actttccagcagttccaaaaccgtaacctgatgaagcaaagaatctttgaaaatctacag
cagactggtggctactccaggctgggtcaagccatggaatttgtaatcttgaagaatctt
ttcactgtttccaagcctcgaaaatacaagatgctgctgcttatagtgggaggagagaca
gaatattctgatagagaaaaattggactttatctccagaatggcaaagtgccagggtgtg
gtgctttgtactcttgcagttggtgataatttcaacagcactcaggtagaggaaattgcc
agcttccccacagagcagcacattgttcacttgggccatgtaaagcaaggagagcaggaa
tacgctcgccgctttataaggactttcctacacattctgagtcggcaaatgaacacctac
ccttctccattgtttaaacaacaatgtaagagtcttcagcaacagcaaggacaaggtaaa
ggccctgtccttgatgtctttgaggctgtcaagagaccacccattaacaggtttcctctc
acaggatctacttacactgaggttacagagaaagaatttgtggaggagattgaagaagaa
acagagttttcagaacagagagggccacagatggagactgagtatagaaatgaggatggg
ctcttcttgggacctggaatgtcaaatgctacagatatgtgctacttgaaaaagaatgat
gggccctgtacaaattttgtacttaaatggttttatgatcaaaacaaaaatcaatgcatt
cagttctggtatggaggatgtgatggaaaccttaacagatttgacagtaaggagcaatgt
gaaacccgatgtgtggaccttcataccctacagtga
DBGET
integrated database retrieval system
