Silurus meridionalis (southern catfish): 124386771
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Entry
124386771 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124386771
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124386771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-ANAPC11
zf-RING_6
Fuz_longin_3
U3snoRNP10
DUF2408
Motif
Other DBs
NCBI-GeneID:
124386771
NCBI-ProteinID:
XP_046706687
LinkDB
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Position
6:complement(28078646..28082011)
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AA seq
553 aa
AA seq
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MAERFGFQDQFICPICLDLLKDPVTIQCGHSFCMRCINGCWDQEDQKGVYSCPQCRQTFT
PRPAVSKNTVLAEVMETLRRAGHQGTRSTQCPAGPEDVECDSCSGRKDKAVKSCLVCLAS
FCETHLQPHYESPAFKKHKLVEAFRHLHEQICSQHDKLLEVYCRTDQRCICMLCMLEEHK
GHDTVSAAAERPQKQKQFLEMQGQNKQKIQEKEEKLQKLMNAMDNHERSAQTAVQECERI
FTELTKSIERRCDEVTALIRAQEKSESIRADDSVKTLEYEIAALKRIDTEMEELSHTQDP
VHFLQSFQSFYDVPKSVFIPTINSHVSFDEIIKSVSDLREKVEEYSKEEFGKIKDGVSNI
CIFPHPQPESREDFLQYSRRLTLDPNTANIHLSLSEGNTSVTCSTAAQSYPDHEDRFDSH
LQVLCSERVSGRCYWEVECSGHCEVSIAVSYKTILRKGNSNNCVFGCNNKSWRLFRSPSE
LLFWHNNKKTEISVIPSSFRIGVYVDHKAGVLSFYSVSDTMKLLHRVNTTFTQPLYPGFM
VWVGSSLKLYHLK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaagattcggatttcaggaccagttcatttgtccaatctgtctggatctcctc
aaggatccagtgactattcagtgtggccacagtttctgtatgcggtgcattaatggctgc
tgggatcaggaggatcagaagggagtctatagctgtcctcagtgcagacaaaccttcact
ccaagacctgctgtgagtaaaaacactgttttggctgaagttatggagacactgaggagg
gcaggacaccaaggtacacgttccactcaatgtccagctggacctgaggatgtggagtgc
gattcctgctctgggagaaaagacaaagcagtgaagtcgtgtctggtgtgtctggcgtct
ttctgtgaaactcacctccagcctcactatgaatctcctgcctttaagaagcacaagctg
gtggaagccttcagacatcttcatgagcagatctgctctcagcacgacaaactgctggag
gtttactgtcggactgaccagaggtgtatctgcatgctgtgtatgttagaggaacataaa
ggacatgatacagtatcagctgcagcagaaagacctcagaaacagaagcagtttttggag
atgcagggacaaaataagcagaaaatccaggagaaagaggagaagcttcagaagctgatg
aatgctatggacaatcacgagcgctctgcacaaacagcagtgcaggagtgtgagaggatt
tttacagagctgaccaaatccattgagagaagatgcgacgaggtgacagcgctgatcaga
gctcaggagaaatccgagtcgattcgagcagacgattccgtgaagacactggagtatgag
attgcagcgctgaagaggatagacactgagatggaagagctttctcacacacaagatcct
gtccatttcctccagagttttcagtctttctacgatgttcctaagagtgtattcataccc
accatcaattcccatgtctcttttgatgaaatcataaaatcagtgtctgatttgagggag
aaagtagaagaatactctaaagaggagtttggaaaaattaaagacggagtgagcaacatc
tgtatatttcctcacccacaacccgaaagcagagaagattttctacaatactcgcgtcga
ctgacactggatccaaacacagctaatatacacctcagtctgtctgaagggaacacatcg
gtgacctgcagcacagcagctcagtcgtatcctgatcatgaagacagatttgattctcat
ctccaggtgttgtgtagcgagcgtgtgagtggacgttgttactgggaagttgaatgcagt
ggacattgcgaggtttctatagcagtgtcgtataaaaccatcctcaggaaaggaaacagt
aataattgtgtgtttggttgcaataataagtcctggagactcttccgatctccgtccgaa
ttgctattctggcacaataacaaaaaaactgaaatatcagtcatacccagttccttcaga
ataggtgtgtatgtggatcacaaggcaggagttctatccttctacagcgtctctgacacc
atgaagctcctccacagagttaacaccacattcacgcagcctctttaccccggatttatg
gtttgggttggatcatcactcaaattatatcatttaaaataa
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