Silurus meridionalis (southern catfish): 124387554
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Entry
124387554 CDS
T08004
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03460
Fanconi anemia pathway
smeo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
124387554 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
124387554 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124387554 (her6)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124387554 (her6)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
124387554 (her6)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
124387554 (her6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
Motif
Other DBs
NCBI-GeneID:
124387554
NCBI-ProteinID:
XP_046708305
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All DBs
Position
1:complement(32372581..32374635)
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AA seq
274 aa
AA seq
DB search
MPADPMEKNSSSPVAATPASLNSVPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNMQRAQMTAALNADPTVLGKYRAGFSECMNE
VTRFLSTCEGVNAEVRTRLLGHLASCMSQLNAMNYSAQAHAGAAPPPPPPSATFGQPVVQ
IPGATHVPVPVSVPACKSAPPPGASPSDAAKVYGGFQLVPATDGQFAFLIPSGAFNPGGP
VIPVYASGAGTGLPSAAASPREASLTPDSVWRPW
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgacccgatggagaagaactcatcgtccccggtggctgcgacccccgcaagc
ctgaacagcgtcccggacaaacccaagaccgcctccgagcacagaaagtcatccaaaccc
atcatggagaaaaggagacgcgcgaggatcaacgaaagtttgggtcagctcaagactctc
atcctggacgctcttaaaaaagacagctccagacactccaaactggagaaagcggacatc
ctggagatgaccgtcaagcacctgaggaacatgcagcgcgcgcagatgaccgccgctctg
aacgcggaccccaccgtgctcgggaaataccgcgcaggcttcagcgagtgcatgaacgag
gtgacccgtttcttgtccacgtgcgagggcgtgaacgccgaggtgcgcacgcggctcctg
ggacacctggccagctgcatgagccagctgaacgcgatgaattactcggcgcaggcgcac
gcgggagccgcgccgccgccgccgcctccttccgcgaccttcggtcagcccgtggtgcag
atccccggcgccacgcacgtgcctgtgccagtgtcggtgccggcgtgcaagagcgcgcct
ccccctggcgcgtcgccttcggacgcggccaaggtgtacggaggcttccagctcgtccca
gccacggatggacaattcgccttcttgatccccagcggcgcgtttaaccccggcggcccc
gtgatcccggtgtacgcgagcggcgcgggcacgggcctcccttcagccgccgcgtctccg
cgcgaagcgtcgctcactccagactctgtttggagaccttggtag
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