Silurus meridionalis (southern catfish): 124389705
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Entry
124389705 CDS
T08004
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124389705 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124389705 (si:ch211-266g18.9)
Membrane trafficking [BR:
smeo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124389705 (si:ch211-266g18.9)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
LRR_9
Motif
Other DBs
NCBI-GeneID:
124389705
NCBI-ProteinID:
XP_046711105
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Position
8:3289930..3300861
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AA seq
840 aa
AA seq
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MDVYSSSLVFEKVAAAKGKDKFVIQCIEWSCDNLYIGSKDGVLQLFAPSSRNGMGDHPTL
REVRKRQMGRGGEISQLKAVPVLNHLLVLWDSSITALNMFSLEPIAALKKLQNVSLFRLG
EPVVHAQQVSVQLFTASTKRRALSIYKVCVDRWECVGNVALAQDPVALAVRGTCLCIATS
DRYILQDYQTQSVLELFTHNLRRQNVLAKESVKGEFLLNCPGNLGMFVMNSGISQRPPVP
FPDGVLDAVVHFPYVLVLQSKSIQAYSMLDQQLKQTVPLNSAKSLLSTTDAVFVVEEREI
HRLSQSPLEVQIRKLLELERVNEAHTLLEGVQSILPEDSYKNLHSSIICTSGWINFYREA
FLEAKELFIKGDLDPRELISLYPGMTVISDGFKPQPPTVSNAKDMEKLNNEAQPEFQKYL
IFLCLYLNAIRRTDLGQNFLQDIDTTLLKVYLTLGYFDNLNQLVSCHNDCVLEMCVPDLK
HQKRFFAIGLLYQSKGQHLDAIQTWVWMVDDDSVDSSEPNVLLHIVKTLSQLKEKSIIMK
FIEWALQKDQKVGVLIFTERNPGDQGTFKPQEVLSILMNYPVALVSYLDFLINEQQSQME
KHHTLLANTYAALILQPDREMQNHDTNMEEIREKMQQFLWQSSFYDAESVYAKIQSSVLH
VEKAIVLGRIGEHKKALRLLVDEERDDKAAENYCWRTSAGRNRDFMQQLFSWLLQVYLES
GPHFSMAVDLLNQNATAFNLLWVLEVLPGSWSMQLIMRFLCEAVRAMTHDRRMKGLEKSL
VRMDNLRQRHAWMEATQGMVRMDRTRVCHSCGRPFTGPEFQRWSTGELVHTHCYSTNNSS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctatagctcctcgctggtgttcgaaaaggtggcggctgccaaaggaaaagat
aagtttgttattcagtgcatagagtggtcctgtgacaacttgtacatcgggagtaaagat
ggagtcctgcagcttttcgcaccgagttcgaggaacggaatgggagatcatccgacgctg
cgagaggtaagaaagagacagatgggccgaggtggagaaatcagccagctgaaagcagtc
ccagtcctaaaccacctccttgtgctttgggacagctccatcacggcgttaaacatgttc
tctctggagcccatagcagccctgaagaagctccagaacgtttctctgtttcgccttggt
gaacccgtggttcacgcgcagcaggtttccgtacagctcttcactgcctccaccaaacgg
cgagcattgagcatatacaaggtgtgtgttgacagatgggagtgtgtagggaacgtggct
ctggctcaggaccctgtggctttggctgtgcgtgggacttgcctgtgcatagccacgagt
gacagatacatcctccaggattatcagactcagagcgttctcgaacttttcacacataac
ctgagaaggcaaaatgttctcgcgaaggagagcgtgaaaggagagtttcttctcaactgc
ccagggaacttgggcatgtttgtgatgaatagtggtatatcccagcgtcctcctgtgccg
tttcctgatggagtattggatgcagtagttcacttcccatatgtgttggtgctgcaaagt
aaatcgatccaagcctacagcatgttggaccagcagctcaaacaaaccgttcccctaaac
agcgccaaatcgctcctctccaccacagacgccgtgtttgtagtcgaggagagggagatt
caccgtctgtcacagagtccactggaggttcaaatccgaaagctgctcgaacttgagcga
gtgaacgaagcacacacgctgctggaaggagttcagtctattctgcctgaagactcttac
aagaatctccacagcagtataatttgtacctccggatggattaatttttacagagaagcg
tttctcgaggccaaagaacttttcattaaaggtgatttggacccaagggaactcattagc
ctttacccaggcatgactgtcatcagtgacggctttaaacctcagcctccaaccgtaagc
aatgctaaagacatggagaagctgaataatgaagcccagccagagtttcagaagtatctg
atcttcctgtgcctttatttaaatgcgatccggaggaccgatctgggccaaaacttcctt
caggacatcgatactaccctgcttaaagtttacttaacgctcggatattttgataacctg
aaccagcttgtgtcttgtcataatgattgtgtgctggagatgtgcgtgccagatctgaaa
catcagaaaagatttttcgccatcggactgctctatcaaagcaagggtcaacatttagat
gcaattcagacctgggtgtggatggtggatgatgacagtgtggactcctctgagccaaat
gttcttctgcacattgtaaaaactctctcacagttgaaagagaaatctatcatcatgaag
tttatagagtgggctcttcaaaaagaccaaaaggtcggggtattaatcttcacagagaga
aatccaggcgaccaaggcacatttaaaccccaagaagtgctttccattttaatgaattat
ccagttgctttagtttcctatttggattttttgatcaacgagcagcaaagtcagatggag
aaacaccacactctgctggccaacacatacgctgctctgatccttcaacctgaccgagag
atgcagaatcatgacacaaacatggaggaaataagggaaaaaatgcagcagttcctgtgg
caatcctcgttctatgacgctgaatctgtatacgccaaaatacagtcatctgtgctccat
gttgagaaagcgatcgtgctcgggagaatcggggaacacaaaaaggccctgcggcttctt
gtcgatgaagaacgagatgacaaagcagcagaaaattactgctggaggacctctgctgga
cgaaaccgggacttcatgcagcagctcttcagctggttgcttcaggtttacctcgaatcc
ggacctcacttttctatggcggtggatctcctgaaccaaaacgctaccgcttttaatcta
ctctgggtattggaagtgcttcctggctcctggtccatgcagctgatcatgcgtttcctg
tgcgaggcagtgagagcgatgacacatgacaggaggatgaaaggcctggagaagagtcta
gtcaggatggacaacctcagacagagacatgcctggatggaagcaacacaaggaatggtc
aggatggacagaacccgggtgtgccattcttgcgggaggccgttcactgggcctgaattt
cagcgctggtctactggggaacttgttcacacacactgctacagtacaaacaacagctcg
taa
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