Silurus meridionalis (southern catfish): 124391691
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Entry
124391691 CDS
T08004
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124391691 (frem1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Motif
Other DBs
NCBI-GeneID:
124391691
NCBI-ProteinID:
XP_046714393
LinkDB
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Position
9:complement(2767097..2804241)
Genome browser
AA seq
1937 aa
AA seq
DB search
MGVVVLVWSLVALSHVLLLTQAQSVLRLNSGLRVIRGQSVPVTTEELQFNTDETSEACKV
EVVLNEPVTQRVGKLTPQVFDCHFHPDEVKYVHNGSPLLEEDTVMLRVYRFTHSETFTET
FLLKVQVLGTQQSLVEFGKVPLVVPEFYGLSNAIDSSVLTFRSEPNVICSVRLLNSEISI
PMLGQIIKEDLVQRDQASEVIPGLRKGRQTAISCPGNKACVHNTREVRFLKTSCNEFLSS
GLKYQHLSPPSPEIDYVPIRVELRDQNTRALLKAESVWLPVLIHGAMQNQPPNAAFMSMF
ILEVDQFILTPMTTAALDAKDDETPQAQLVFNVTKPAAEGYITHLDDHTKPVFSFSWQDL
NEMKIAFQPPNSSHTSRKTIEVDFQAIDGFFTSSPPIMLHISIRTAETNAPRVSWNLGLD
LLEGQSRPITWENLQIVDNDNIDSVVLVAVDGPLHGRLSVRGGKGFMFRVKDLREGVVVY
HHSDSDTTRDYIVFRITDGRHSIRHKFPINILPKDDTPPFLINNVAFEVQEGGSVLVEEY
MLMASDLDSSDDYIHYQLVTFPSAGNIVRKNSAHEPGVPVKAFMQRDILQGLIYYKHTGE
EIFEDSFDFILSDIHEPPNLSDRHTVVVHVFPVKDQLPVEVSGTIRSITVKETELVYITQ
NHLHFQVPEHPETDLMYFITQSCFSPTKPQLPDAGRLFYTETTKSMKKDAMIPVLKSFTQ
QAVTHHKIAYMPPIEDIGPEPLFVQFVFSVNDQQGGVLTGLIFNITVMPVDNQVPEMFTN
LLRVEEGGSSFLMEEHLLVRDADSPKEKLRVQVQTQPRCGRLELQGVMLLEGEGFYLQDL
KGLRVRYIHDDSETTSDSIGLMITDGINSAQSELLVQILPVNDEPPQLRLGLRDELSCME
GSRTQITSEYLFATDADSDDTRLTYMLARTPARGVLQRNGVVVDKFTQLDVLNGLIFYLH
TGGEIGPDPISDTITLIVSDGEAGTDGCCQEDAVPPPVPLHGTLPVYDLNVTVIPVNNQA
PSITIANMLAVEEGSSACLCGDLLMATDPDTKPDQLNFFLEIPPLYGFLENTLPSPGFEK
SNAGIQVVSFSQLHLSSGFINYVQAIHHGVEPRSDHFSVSVSDGVYKSEPVPLYIVVNPT
NDETPSLFLHNFTVMEGGMKDLNPAFLDAVDLDAPPDLLSFTILVPPAHGSLLHGIYGLD
MSRYKDIGPEILQRRLPVHSFMLQALRQGMKIMYMHDDTETREDTFSMQLTDGRHTVQGT
AWVHILPVNDEKPRLIKNAGLEVQALESRIISSVALEAEDRDTPSNQIYYVLNMTPRFGL
LQLKIEAGFTNLNAGQNFTQDDIEMNRLLYKHTNFSGFKGHDRFHFFLSDSDNETPSQGF
FIAVQTVQKGDIALITKPMTISEGQRVVLTTDVLMATDSGSQSVELVYTITVPPKHGHLH
MVQHPGIPLLSFTQMDVASHRVCYTHDNSHFTGDDSFSFDISNGVTSIRSILTFTVEHHD
RIPPTLNINTGLQLTERTTRTISSEHLQLTDPDTALENLTFTVVQPPQYGKLLSKGFPMS
PIRFTQLDINSMHLSYQHLHSFARIDRFTFQPSDGTNKGYLEYGQLKEQAAVFTIQIEVL
DKTPPHLVKKGTPSTVEYLQTYQQGIYITSKDLQASDVDSPDQELEFIITRPPHFGYLEN
AITGGFIKGRFTQKDVDQKAVRYVIPSDMEVTADSFEFQLTDQAGNIMLPEVMELRWSRV
ELTASCYRVCENAGTLAVQVMRSGNSVDPAYVGIQVEDGTAKRGKDFTHSSASLIQFDPG
VTVKFWNIYLKDDGLEENHENMEVVLKAQKNVVLGAISRASVEIVDPRHDRCDPDDLIVE
NDEKNVLSYILHGSTSLHLLLHRRKEQGKMTTHQIQILGLYGRIINQEAMSHTAHSTFAS
VVRRQRTSHSPAKEGDS
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggtggtccttgtatggtcactggttgccttgagccatgtcctgctgctgacc
caggcacaaagcgtgttgaggttgaactctggcctgagggtgatccgaggccagagtgtt
cctgtgactacagaagaactccagttcaacactgacgagacctctgaggcctgcaaagtg
gaggtggtcctcaatgagcctgtgactcagagggtgggaaaacttactccacaggtattt
gactgccattttcaccctgatgaggtgaaatatgtccataatggaagcccattattggaa
gaggacactgtcatgctgagagtctatagattcacgcattcagagacattcactgagaca
ttcctattgaaggttcaggtcttaggaactcagcagagtctggtagagttcgggaaagtt
cctctggtggttccggagttttacggcctctctaacgccatcgacagcagcgtgttgacc
ttcagatccgagcctaatgtgatctgtagcgtccgtcttctcaattctgagattagcatc
cctatgttgggtcagatcattaaagaagatctggtgcagagagatcaagcatctgaggtg
atccctggactgagaaaaggtcgacaaacagctatttcttgccctggaaataaagcctgt
gttcataacaccagagaggtacgtttcctgaagaccagctgcaatgagttcctctcttca
ggcttaaaatatcaacatctcagtcctccttcacctgaaatcgactatgtgccgatccga
gtggaactcagagatcaaaacactcgtgccctcttgaaggcagaaagtgtttggcttcca
gtcctgatccatggagccatgcagaaccagcctcctaacgctgctttcatgtccatgttc
atcctagaagtagatcagttcatcctgacccctatgaccacagctgctctggatgccaaa
gacgatgagacccctcaggctcagctggtgtttaacgtgaccaaacctgcagcagagggc
tacatcacacatctggatgatcacaccaagccagtgttctccttctcttggcaagacttg
aatgagatgaagattgcgtttcagcccccaaacagcagccacaccagtagaaagaccatt
gaggttgattttcaggctattgatggcttcttcacatctagtcctcctattatgctgcat
atctcaattcgcacagcggaaacaaacgctccacgagtctcctggaatctggggctggat
ctcctggaaggtcagtccagaccaatcacatgggaaaacctgcagattgtcgacaatgac
aacatagacagcgtcgttctggtggctgtggatgggcctctgcatggacgactcagtgtt
cgaggtggaaagggattcatgttcagggtgaaggacctgcgtgagggtgtggtggtttat
catcattctgatagcgacaccacgagggactacatcgtcttccgaatcacagacgggcgc
cacagcattcgacacaagttccccatcaacatccttcccaaagacgacactcctcctttt
ctaatcaacaacgtagcgtttgaggtgcaggaggggggttcggtgctggtggaggagtat
atgcttatggcttcagatttggattccagtgatgactatattcactaccagctggttact
ttccccagtgcaggaaacatagtcaggaaaaactccgcacatgaaccaggtgttccggtg
aaggcgtttatgcagagggacatattacagggcctgatctactacaaacacacaggagag
gagatctttgaggactcttttgatttcatcctctctgacatccatgaacccccaaatcta
tcagacagacatacagtggtggtccacgtgttccctgtgaaagaccagctgccagtggag
gtctccggtacaatccgttccatcacagtcaaagagaccgagcttgtttatattacacaa
aaccaccttcacttccaagtccccgagcacccagaaactgacctgatgtacttcatcacg
caatcctgtttcagccctaccaaacctcagctaccagatgccggtagactcttctacaca
gaaacgacaaaatccatgaaaaaagacgccatgattccagtgcttaagtcatttactcag
caagcagtgacgcaccataaaatagcctacatgccccctatagaggatattggtcccgag
ccactcttcgtgcagtttgtcttctctgtaaatgaccagcagggcggcgtgctcactgga
cttatcttcaacatcacagtcatgcctgtggacaatcaggttccagagatgttcactaac
ctactgagggtggaagaaggaggaagtagtttcctgatggaggagcacctgttggtgcgt
gatgccgacagcccgaaggagaagctcagggtgcaggtgcaaacacagccccgatgtggc
agactggagctgcaaggtgtgatgctattagaaggggaaggcttctacctacaggaccta
aaaggactgagagtcaggtatatccatgacgactctgaaaccacaagcgacagcataggt
cttatgattacagatggaatcaattcagctcagagtgaacttctagtccagatcctccct
gtgaacgatgagcccccacagctgagattaggcctgagagatgagctctcctgcatggaa
ggcagtcgtacacagattacgtccgagtacttatttgctacagatgcagacagcgacgat
acccgacttacctacatgctggctcggactccggcccgtggggtgctgcaaaggaacgga
gtcgtcgtggacaagttcactcagctcgatgtgctcaatggactcatcttttacctgcac
acaggaggtgaaattggtccagatcccatatcagacactattactcttatagtttctgat
ggagaggccgggactgacggttgctgccaggaagacgcagtcccaccacctgttccttta
catggcacacttcccgtctatgaccttaatgtcaccgtgattcctgtcaacaaccaggca
ccatccataactatagcaaacatgttagcggtggaggagggatcgagtgcgtgtctctgt
ggtgatctgctgatggctacagatcctgacactaagccagaccaattaaacttcttcctg
gagatcccacctctgtatggcttcctggagaacactcttccctcgcctggctttgagaaa
agcaatgctggcatacaagtggtttctttcagccagcttcacctcagctctggatttatc
aactacgtccaggcaattcaccatggtgtggagcccagatctgaccacttcagtgttagt
gtcagtgacggagtctataagtctgaacccgtaccactctacatcgttgtcaaccccacg
aatgatgagactccatctttgtttttgcacaactttacagtcatggaaggaggaatgaaa
gatctcaaccctgcctttctagacgctgtagaccttgatgctccaccagatcttctgagc
tttaccatccttgttcctcctgctcatgggtctctgttgcatgggatctatgggcttgac
atgagtcgctataaggatattggcccagagattcttcagcggagactcccggtgcactcg
tttatgttacaagcactgcgacaaggaatgaagatcatgtatatgcatgatgacacggaa
acacgtgaggacactttcagcatgcagctgacagatggcaggcacactgtccaggggacg
gcatgggtccacatcctaccggtcaatgatgaaaagccccggctaataaaaaacgcaggt
ttagaagttcaggctttggagagtagaatcatctcaagtgtggcgctggaggcggaagat
cgtgacacccctagtaaccagatctactatgttcttaatatgacccccagatttggcctt
cttcaactcaagatagaggctggatttacgaacctaaatgcgggtcagaacttcacacag
gacgatatagagatgaaccgcctgctgtacaaacacacaaacttcagtgggttcaaaggg
catgaccgcttccactttttcctcagtgatagtgacaatgagaccccttcacagggtttc
ttcatcgctgtccaaactgttcagaaaggtgatattgcgctgatcactaaacccatgacc
atatcggagggacagagggttgtactgaccacagacgtcctcatggctacagatagtgga
agccagtcagtcgagcttgtctacaccatcaccgttcctcccaaacatggacacctacac
atggtccagcaccctggaatccctctgctctccttcacgcagatggatgtggcttcacac
cgggtgtgctacactcacgacaacagtcatttcactggcgacgattccttcagctttgac
atcagcaatggtgtgacctccatcaggagtatccttaccttcacagtggagcaccatgac
cgtatcccacccaccctgaacatcaacactggcctccagcttaccgaaagaaccacgaga
accatctcatcagaacacctgcagctcacagatcccgacacagccttggagaaccttacc
ttcactgtcgttcaaccaccgcagtatggcaagctactatcaaagggctttcccatgtcc
ccgatccgattcacgcaattagacataaacagcatgcatctgagctaccagcaccttcac
agcttcgctaggattgacaggttcacttttcagccatcagatggaaccaataaaggctat
ctggaatacggacagctgaaggagcaagcggcggtttttaccatacagatagaggtctta
gacaagactcctccacaccttgtaaaaaaagggacacccagtacagtggagtatctacaa
acctaccagcagggaatttatatcacctccaaagacctccaggcttcagatgtggacagc
cctgaccaggagctcgagttcatcatcacaaggcctccacattttggatatcttgagaac
gccatcacaggtggatttattaaaggacgcttcacccaaaaggatgtggaccagaaagca
gtccgctacgttattccttcagacatggaagtgacagcagacagctttgagttccagctt
actgaccaagcaggcaacatcatgcttccagaagtaatggagctccgatggtcccgggtg
gagctgacggcttcctgttatcgcgtgtgtgagaacgcaggaactctagccgtgcaggtg
atgcgcagtgggaacagcgtagaccctgcctatgttggcatccaggtggaagatggtacg
gccaagagggggaaggacttcactcacagctcggctagtctgatccagtttgatccagga
gtcactgtcaaattttggaatatttacctcaaagatgacgggctggaggagaaccatgag
aatatggaggtggtgctgaaagcccagaagaacgttgttttaggtgcaataagcagagcc
tcagtggaaattgtggatcccaggcatgatagatgtgacccagatgacctgattgttgag
aatgacgagaaaaacgtcctgtcctacatcctccacggatccacaagcctccacctcctc
ctccaccgacgcaaggagcaggggaagatgactacacaccagatccaaatactgggattg
tatgggagaattatcaaccaagaggcgatgtcccataccgcacacagtacattcgcttcc
gtggtacggaggcagcggaccagccattccccagccaaggaaggagacagctaa
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