Silurus meridionalis (southern catfish): 124394213
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Entry
124394213 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124394213
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124394213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-B_box
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_10
U-box
DUF6591
LMBR1
rhaM
DivIC
DUF6377
Motif
Other DBs
NCBI-GeneID:
124394213
NCBI-ProteinID:
XP_046718304
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All DBs
Position
12:complement(25217824..25226572)
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AA seq
550 aa
AA seq
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MAEVVDQNQFICAVCLDLFKDPVTTSCGHSYCKVCINGCWDQEDLQRVYSCPQCRETFTP
RPVLRRNNILAEVVEKLKETELQAASPAQWNTGSGDVDCDSCTERKLKAVKSCLVCLASY
CEDHLKPHYQSQAFKMHKLVEACVDLQEKICSHHDKLMEIYCRTDQSFICYLCMTDEHKG
HDTVSTTAERSKKQNELKEEQIKSQQKIQEKQKKVQELKQTVDTIKKRSQAAVDDNEKIF
NEIISSLVKRCSEVTELIRVQEKADLSRAEQHLKHLEQEITDLQRRVSDLEQLSHIPDHI
HFLQSFPSLCVSPGCDDSPSFTVNQHLSFDGVRKSVSDLKKRVEEICQEEFNKIRPQAAA
VQMIFPEPKSREDFLQYFCYLTLDPNTAHPQLILSENNRVVRCSNTWQRYSDHPERFDYY
FQVLCKESVCGRCYWEVEWNGDVVDISVSYKEISRKGEGDERVFGRNSQSWSLKCSSSSS
VSFWHNNINTDLRVPSPSRIGVYVDHSAGTLSFYSVSDTMRLLHRVHTTFTQPLYAGFWT
DYNTVMWFCD
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggttgtagatcagaatcagttcatctgtgcagtgtgtctggatcttttcaag
gatccggtcactacttcttgtggtcacagttactgtaaggtgtgtattaatggttgttgg
gatcaggaggatctgcagagggtctacagctgcccccagtgtagagaaactttcactccg
aggcctgttctacgcaggaacaacattctggctgaagtggtggagaaactgaaggagact
gaactccaagctgcttctcctgctcagtggaacacaggatctggagatgtggactgtgat
tcctgcactgagagaaaactcaaagccgtcaagtcctgtctggtgtgtctggcctcgtat
tgtgaagatcatcttaaacctcactatcagtctcaggcttttaagatgcacaagttagtt
gaagcctgtgtagatctccaagagaagatctgctctcatcacgacaaactgatggagatc
tactgccgtactgaccaaagcttcatctgttacttgtgtatgacggatgaacataaaggc
catgatacagtttcaactactgcagaaagaagtaaaaaacagaatgagttaaaggaggag
cagattaaatcccagcagaagatccaggagaagcagaagaaggtgcaggagctgaaacag
actgtggacactattaagaagcgttcacaggcagcagtagatgataatgagaagatcttt
aatgagataatcagctccctggtgaaaaggtgctcggaggtgactgagctgatcagagtt
caggaaaaagctgatctgagtcgagctgaacaacacctgaaacatctggagcaggagatc
actgatcttcagaggagagtcagtgatctggagcagctttcacacatacctgatcacatc
cacttcctccagagtttcccgtctctttgtgtttctcctggatgtgacgactcacccagc
ttcactgtcaatcaacatctctcatttgatggagtgaggaaatctgtctcagatctgaaa
aaacgagtcgaggaaatctgtcaggaggaattcaacaaaatccgtccacaagctgcagca
gttcagatgattttcccagaaccaaagagcagagaagattttctgcagtatttctgttat
ctgactctggatccaaacacagcacatcctcaactcattttgtctgagaacaacagagtc
gtgagatgcagtaatacatggcagcgatactctgatcatccagagagatttgactactat
tttcaggtgttgtgtaaagagagtgtgtgtggacgctgttactgggaggtggagtggaat
ggtgatgttgtggacatatcagtctcatataaagagatcagcaggaaaggagagggtgat
gagcgtgtatttggacgcaacagtcagtcctggagtctgaagtgttcttcttcttcctct
gtctctttctggcacaataacattaatactgatctcagagttccatcaccatccagaata
ggagtgtatgtggatcacagtgcaggaactctgtccttctacagcgtctctgatacgatg
aggctcctccacagagtccacaccacattcactcaacctctatacgctggattctggacc
gattataacacagttatgtggttttgtgattga
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