Silurus meridionalis (southern catfish): 124394216
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Entry
124394216 CDS
T08004
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124394216
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124394216
BRITE hierarchy
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GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
DUF6591
U-box
zf-RING_5
zf-RING_10
Zn_ribbon_SprT
Pox_A_type_inc
AAA_24
Motif
Other DBs
NCBI-GeneID:
124394216
NCBI-ProteinID:
XP_046718307
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Position
12:24964805..24998676
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AA seq
544 aa
AA seq
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MAEACISVNRLSVDQFICAVCLDLLKDPVAIPCGHSYCKVCINGCWNQEDMKGIYSCPQC
RETFTPRPVLRRNNMLAEVVEKLKNTELQAASPAHCYAGPGDVDCDSCTGRKLKAVKSCL
VCLASYCEDHLKLYYQSQAFKKHKLVEACVDLQEKICSQHDKLMEIYCRTDQSFICYLCM
MDEHKGHDTVSTTAERSKKQNELKEEQIKSQQKIQEKQKKVQELKQTVDTIKLHSQAAVD
DNEKIFNEMISFLVKRRSEVTELIRVQEKAELTRAERLLKHLEQEITNLQRRVSDLEQLS
HIPDHIHFLQSFPSLCVSPGCDDSPSFTVNQHLSFDGVRKSVSDLKKRVEEICQKEFNKI
RPQAAAVQMILPSEPKSRDFLQCSKSNFCYLTLDRNTAHPQIILSEKNRVVRRSNTKQRY
SDHPERFGSWSQVLCKESVCGRCYWEVEWNSVVYISVSYCYARNLEAKAEVKANDSLFET
QGNNQTHSPKRVNNPGGAVAARSTVHETQQASSRCIDPRYAWKKRGTEQSTGKRVTGSKT
MNNN
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcctgtatttcagtaaatcggttgtcagtggatcagttcatctgtgctgtg
tgtctggatctccttaaggatcctgtagctattccttgtggtcacagttactgtaaggtg
tgtattaatggctgctggaatcaggaggacatgaagggcatctacagctgcccccagtgt
agagaaactttcactccgaggcctgttctacgcaggaacaacatgctggctgaagtggtg
gagaaactgaagaacactgaactccaagctgcttctcctgctcactgttacgctggacct
ggagatgtggactgtgattcctgcactgggagaaaactcaaagccgtcaagtcctgtctg
gtgtgtctggcctcgtattgtgaagatcatcttaaactttactatcagtctcaggctttt
aagaagcacaagttagttgaagcctgtgtagatctccaagagaagatctgctctcagcac
gacaaactgatggagatctactgccgtactgaccaaagcttcatctgttacttgtgtatg
atggatgaacataaaggccatgatacagtttcaactactgcagaaagaagtaaaaaacag
aatgaactaaaggaggagcagattaaatcccagcagaagatccaggagaagcagaagaag
gtgcaggagctgaaacagactgttgatactataaagttgcattcacaggcagcagtagat
gataatgagaagatctttaatgagatgatcagcttcctggtgaaaaggcgctcggaggtg
acggagctgatcagagttcaggaaaaagctgaactgactcgagctgaacgactcctgaaa
catctggagcaggagatcactaatcttcagaggagagtcagtgatctggagcagctttca
cacatacctgatcacattcacttcctccagagtttcccgtctctctgtgtttctcctgga
tgtgacgactcacccagcttcactgtcaatcaacatctctcatttgatggagtgaggaaa
tctgtctcagatctgaaaaaacgagtcgaggaaatctgtcagaaggaattcaacaaaatc
cgtccacaagctgcagcagttcagatgattttaccctcagaaccaaagagcagagatttt
ctgcagtgtagtaaatctaatttctgttatctgactctggatcgcaacacagcacatcct
caaatcattctgtctgagaagaacagagtcgtgagacgcagtaatacaaaacagcgatac
tctgatcatccagaaagatttggctcctggtctcaggtgttgtgtaaagagagtgtgtgt
ggacgctgttactgggaggtggagtggaacagtgttgtgtacatatcagtctcatattgt
tatgcgaggaatctggaggcaaaagccgaagtgaaagcaaatgacagtttatttgagaca
cagggcaataaccaaacacactcgccgaaaagggtgaataatccggggggtgcagtggcg
gcgcggtccacggtgcatgaaacacaacaagctagtagtcggtgtatagatccacggtac
gcttggaagaagcgcggtactgaacagtccacgggaaagcgtgtgacgggcagcaaaacc
atgaacaataactga
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