Silurus meridionalis (southern catfish): 124400738
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Entry
124400738 CDS
T08004
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124400738 (ddx1)
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124400738 (ddx1)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124400738 (ddx1)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124400738 (ddx1)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124400738 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
124400738
NCBI-ProteinID:
XP_046728421
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All DBs
Position
18:complement(20785077..20794008)
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AA seq
741 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEW
HGCRSTRAVTKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKFGFGFGGTGKKSHNKQF
DSYGEEFTMHDTIGCYIDLEKGHMSFSKNGNDLGLAFEIPKNLISQPFFASCVLKNAELK
FNFGGEPFKNAPKEGYIALDKAPDGHVVKTTQTGSATVSQVKTSSSAPKALIVEPSKELA
EQTLNNVNQFKKYVENPKLRELLIIGGVAAKDQLSVLESGVDIVVGTPGRLDDLISTGKL
DLSQVRFLVLDECDGLLSAGYTDFIMRVYSKIPQVTSDGKRLQVIVCSATLHSFDVKKLS
EKIMHFPTWVDLKGEDSVPETVHHVVVPVSPKTDKLWEKLGKNHIRTDEVHAKDNTRPGA
NTAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPDKKGHQ
FSCVCLHGDRKPNERKYNLERFKKKDVRFLICTDVAARGIDVHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEEGGCTIWYNEKELL
GEIEEHLKCTITQCEHDIKVPLDEFDGKVTYGQRRAAAGGLYKGHVDILAPTVQELANLE
REAQTSFLQLGFLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcggagaaatgggagtgatgcctgaaatcgctcaggctgttgaagaaatg
gactggctgcttcccactgacatccaagccgagtccattcccctgatcctcggcggagga
gacgttctcatggccgctgagacaggaagtggaaaaaccggggccttcagcatcccagtg
atccagatcgtgtacgagactctgaaagatcagcaggaggggaagaaaggtcgcagtgct
gccgtgaagaccggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagc
ccagcgtttgctatcgggccggacgggctgtgctgccagagcagagagtttaaggagtgg
cacggctgcaggtccacccgggccgtgactaaaggaaagtattactatgaagtctcctgc
catgaccagggcttgtgcaggatcggctggtccaccagtcaggcagctctggacctgggt
acagacaagttcgggtttggcttcggagggaccgggaagaagtcccataataaacagttt
gatagttatggagaggagttcaccatgcacgacaccattggctgctacatcgaccttgaa
aaaggccatatgtccttctccaaaaacgggaacgatctgggcctggcgttcgagattccc
aagaacttgataagtcagccgttcttcgcttcctgtgtgcttaagaatgccgaactgaag
ttcaattttggtggtgaacctttcaaaaacgcccccaaagaggggtacattgctctggac
aaggcacccgatggccacgtggtcaaaaccactcagactggcagtgccacagtaagtcag
gtcaaaaccagctccagtgcccctaaagctctaattgtggagccgtccaaagaactggct
gagcagaccctcaacaacgtcaaccagttcaagaaatacgtggagaatcccaaactgcgt
gagttgctgatcatcggaggcgtggcagcaaaagaccagttgtctgttttggaaagcggg
gttgatatcgtggttggcacccccggcaggctcgacgatctcatatccactggaaaactc
gatctgtcccaagtccgcttcctggttctggatgaatgcgacggactgctttccgctggc
tacaccgacttcatcatgagggtctacagcaaaatcccccaggtcacctcggatggaaag
agactgcaggtgatcgtgtgctcggcgaccctgcactcgttcgacgtgaagaagctgtca
gagaagatcatgcacttccctacgtgggtggacctgaaaggtgaagactccgtgcctgag
acggtccatcacgtggtggtgcccgtcagcccgaaaaccgacaagctctgggagaagctg
ggaaagaaccacatccggactgatgaagtgcacgcgaaagacaacacgagacctggagca
aacactgcagagatgtggtcagaggcgatcaagatcctgaaaggggagtacacgatccgt
gcaatcaaggagcacaagatggaccaagccatcatcttctgcaggaccaagatcgactgc
gacaacatggagcagtacctgatcgctcaagggggaggtcctgataaaaaaggccatcag
ttttcatgtgtgtgtcttcacggagacaggaagcccaacgagcgcaaatacaacttggag
cggttcaagaaaaaggatgtgaggtttctgatctgcacggacgtagcagccagaggaatc
gacgtccacggcgttccgtacgtcattaacgtgaccttgccggatgagaagcagaattac
gtgcatcggatcgggagagtgggcagggcggagaggatgggtctggccatttctctagtg
gcaatggaaaaggagaaggtatggtatcacgtttgccctaacagaggccggggttgctat
aacaccaggttaaaggaggaaggaggctgcactatatggtacaacgagaaagagctcctg
ggagaaatcgaggaacacctgaagtgcaccatcactcagtgtgagcacgacatcaaagtt
cccttggacgagttcgatggcaaggttacttacggtcagcgccgagctgctgcaggtgga
ctctataagggccacgtggatattttggcccctacagtacaggagctggcgaacctggag
cgagaggctcagacctcctttctgcagctcggttttctccctaatcagctctttaaagct
ttctga
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