Silurus meridionalis (southern catfish): 124401386
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Entry
124401386 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401386
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-RING_6
Zn_ribbon_SprT
PRP1_N
DUF6591
AMP-binding_C_2
Motif
Other DBs
NCBI-GeneID:
124401386
NCBI-ProteinID:
XP_046729633
LinkDB
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Position
18:complement(25261448..25265013)
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AA seq
570 aa
AA seq
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MAEASISLDQDQFICPVCLDLLKDPVAIPCGHSFCKVCINGCFDQEDQKGVYSCPQCRDT
FTPRPVLRRNNMLAEVVEKLKKTEVQAPSPAYHYAGLGDVECDFCTEKKHNAIMSCLVCV
ASYCETHLRPHYVSPAFKNHTLIEASTKLQEKICTEHNKLIEIYCRTDQTCICYLCTMDK
HKGHDTVTVSGERAEKQTELKKEQKKSQQRIQEKQKKVQELKQAVNIIKLSAQTAVDDSE
KIFTEMISSMEKKRSEVTELIRDQEKAELSRPERLLEQLEQEISDLQRRITELEQLSHTH
DHIHFLQSFQSLCVSAGRRSPSFKRPNFHTSSSIVFQHRLSDGVRNSLSDLKKGLEEICE
KKFNKISPQVQCSLSEPQSRDEFLKYFSYLTLDPNTVHYNLILSKNNRAVRDSQGLQHYS
DHPERFNYWPQVLSKESVCGRCYWEVELSSDRGVSIAVSYKDISRKGLGSECLFGGNNHS
WSLQCSSSHSLIYYHNNIITDLGFPSPSIIGVYVDHSAGTLSFYSVSDTMKLLYRIHTTF
TQPLYAGFGLPFVQNTLLSSASSVRLCDPE
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggccagtatttcattagatcaggatcagttcatttgtccagtgtgtctggat
ctcctgaaagatccggtggctatcccgtgtggtcacagtttctgtaaggtgtgtattaac
ggctgctttgatcaggaggatcagaagggtgtctacagctgtcctcagtgcagagacacg
ttcactccaaggcctgttttacgcagaaacaacatgctggctgaagtggtggagaaactg
aagaagactgaagtccaagctccttctcctgcttatcattacgctggacttggagatgtg
gagtgtgatttctgcaccgagaaaaaacacaatgccatcatgtcctgtctggtgtgtgtg
gcgtcttactgtgaaactcatctgagacctcattatgtgtctcctgcttttaaaaaccac
acattaattgaagcctcaacaaaactacaagagaagatctgcactgaacataacaagctg
attgagatctactgcagaactgatcaaacctgcatctgttatttgtgtacgatggacaaa
cataaaggacacgacaccgtcacagtctcaggagaacgagctgagaaacagactgagtta
aagaaggagcagaagaaatcccagcagagaatccaggagaagcagaagaaggtgcaggag
ctgaaacaggctgtgaacattataaagctcagtgcacagacagcagtagatgacagtgag
aagatctttactgagatgatcagctccatggagaaaaagcgctcggaggtgacggagctg
atcagagatcaggagaaggctgaactgagtcgacctgaacgactcctggagcaactggag
caggagatttctgatcttcagaggagaatcactgagctggagcagctttcacacacacac
gatcacatccattttctccagagtttccagtctctctgtgtttctgctggacgtcggtct
ccttcatttaaaagaccaaattttcacacctccagcagcattgtctttcaacatcgctta
tcagatggagtgaggaattctctctcagatctaaagaagggactcgaggaaatctgtgag
aagaaattcaacaaaatctctccacaggttcaatgttctctttcagagccacagagcaga
gacgagtttcttaaatatttctcttatctgactctggatcccaacacagtacattataac
ctcattctctctaagaacaacagagcagtgagagacagtcagggattacagcactactct
gatcatccagagcgattcaactactggcctcaggtgttgagtaaagagagtgtgtgtgga
cgctgttactgggaggtggagttgagcagtgataggggtgtgtctatagctgtctcatat
aaagacatcagcaggaaaggactgggtagtgagtgtctgtttggaggcaacaatcactcc
tggagtctgcagtgttcttcttctcattctctcatttactatcacaacaacattattact
gatctcggatttccatccccatccataataggagtgtatgtggaccacagcgcaggaact
ctgtccttctacagcgtctctgacaccatgaagctcctctacagaatccacaccacattc
actcagcctctgtacgccggatttggacttccctttgtacaaaacactttattaagttct
gcatcatctgtgagattgtgtgatccagaataa
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