Silurus meridionalis (southern catfish): 124401391
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Entry
124401391 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401391
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
EzrA
U-box
zf-RING_5
zf-RING_10
Cas_DxTHG
Spc29
Peptidase_S46
Zn_ribbon_SprT
LXG
zf-RING_6
DUF4407
Motif
Other DBs
NCBI-GeneID:
124401391
NCBI-ProteinID:
XP_046729635
LinkDB
All DBs
Position
18:complement(26661019..26664115)
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AA seq
568 aa
AA seq
DB search
MSEASISVDQLSVDQFICPVCLDLLKDPVTVPCGHSFCKVCINGCWDQEDQKGVYSCPQC
RDTFTPRPVLRRNNMLAEVVEKLKKKTEVQAASPDRCYAGPGDVECDFCTVRKHKAVKSC
LVCVASFCEIHLKPHLEVPALKKHTLTEASAKLQEKICSEHDEVLKIYCRTDQISICSLC
MLDKHKGHDAVSVTAGRAEKQRELKKQQMKSQQRIQEKQKKVQELKQAVNTIKLSAQTAV
EHSEKIFTEMISSMEKMRSEVKEMIRAQEEAELSRAERLLEQLEQEITDLQRRVTELEQL
SHTHDHVYFLQSFQSLCVSAGCRSPPGKRPDFHTSSITVHQHHLSDGMRKYFSYLKKKLE
EFCEEEFNKIPAQVQSFLSEPQSRDEFLKYFCYLTLDPNTAHRNLILSEKNRAVIDSERK
QQNSDHPERFHSWPQVLCEESVCGRCYWEVEWSGVGVNISVSYKDIRRKGRGDECRFGRN
NQSWSLRCSSSSLCFFHNNIETDLRVPSPSRIGVYVDHSAGTLSFYSVSDTMKLLHKVQT
TFTQPLYAGFGLPYFSFDKSTVRLCDPE
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggccagtatttcagtcgatcagctttcagtggatcagttcatctgtccagtg
tgtctggatctcctgaaggatccggtgactgtcccgtgtggtcacagtttctgtaaggtg
tgtattaatggctgctgggatcaggaggatcagaagggtgtctacagctgtcctcagtgc
agagacacttttactccaaggcctgttctacgcagaaacaacatgctggctgaagtggtg
gagaaactgaagaagaagactgaagtacaagctgcttctcctgatcgctgttacgccgga
cctggagatgtggagtgtgatttctgcactgtgagaaaacacaaagccgtcaagtcctgt
ctggtgtgtgtggcttctttttgtgaaattcatctgaaacctcatctagaagttcctgct
ttgaaaaaacacacattaactgaagcctcagcaaagctacaagagaagatctgctctgaa
catgatgaagtgctgaagatctactgcagaactgatcaaatatccatttgctctttgtgc
atgttggataaacataaaggccatgacgctgtatcagttacagcaggaagagctgagaaa
cagagagagttaaagaagcagcagatgaaatcccagcagagaatccaggagaagcagaag
aaggtgcaggagctgaaacaggctgtgaacactataaagctcagtgcacagacagcagtg
gaacacagtgagaagatctttactgagatgatcagctccatggagaaaatgcgctcggag
gtgaaggagatgatcagagctcaggaggaggctgaactgagtcgagctgaacgactcctg
gagcaactggagcaggagatcactgatcttcagaggagagtcactgagctggagcagctt
tcacacacacacgatcacgtttatttcctccagagtttccagtctctctgtgtctctgct
ggatgtcggtctcctccaggaaaaagaccagattttcacacatccagcatcactgtccat
caacatcacttatcagatggaatgaggaaatatttctcatatctgaagaagaaacttgag
gaattctgtgaggaggaattcaacaaaattcctgcacaagttcagtcttttctctcagag
ccacagagcagagatgagtttctgaaatatttctgttatctgactctggatcccaacacg
gcacatcgtaacctcattctgtctgagaagaacagagcagtgatagacagtgagagaaag
cagcagaactctgatcatccagagagatttcactcctggccccaggtgttgtgtgaggag
agtgtgtgtggacgctgttactgggaggtggagtggagcggtgtgggtgtgaacatttca
gtctcatataaagacatcagaaggaaaggacggggtgatgagtgtaggtttggacgcaac
aatcagtcctggagtctgcggtgttcttcttcttctctctgtttctttcacaacaacatt
gagactgatctcagagttccatcaccatccagaataggagtgtatgtggatcacagtgca
ggaactctgtccttctacagcgtctctgacaccatgaagctcctccacaaagtccaaacc
acattcactcagcctctatatgctggatttggacttccctacttttcatttgataaatct
actgtgagattgtgtgatccagaataa
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