Silurus meridionalis (southern catfish): 124401404
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Entry
124401404 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401404
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-RING_10
TRAF3_RING
U-box
GerE
zf-RING_6
DivIC
Motif
Other DBs
NCBI-GeneID:
124401404
NCBI-ProteinID:
XP_046729654
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All DBs
Position
18:25377098..25380107
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AA seq
557 aa
AA seq
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MNDFSISVDQLPVNKFRCPVCLDLLKDPVDTPCGHSFCKVCINGFWDQEDWIGVYSCPKC
RHTFNPRPVLHRNIMLEKLMEKVKNSEAQAARYDAGPGDVECNLCSGRKRKAVKSCLMCL
NSFCETHLKPHYEVPSWKKHKLIEASGNLQEKICSEHHEILKIYCRTDQSFICYLCPMHE
HRGHDTVAAAAERSEKQTQLKEEQMKFQQRIQEKQKKVQELKQDVNIIKLSAQTAVDDSE
KIFTEMISSMEKKRSEVTELIRDQEKAELSGAERLLEQLEQEISDLQRRITELEQLSHTH
DHIHFLQSFQSLSVSSGCEDSPSITVHQHLTFNRVRKSVSDLKKRFEELCQEEFIIIHEH
AAEVQMILPSEPKSREEFLNYFCDLTLDPNTVHYYLILSEKNKVVTRSETKQSYSDHPER
FNSYCQVLSKESVCGRCYWEMEWSSERNVFISVSYKDIRRIIWGDECVFGHNDQSWSLQC
SSSSVSFYHNNIMTDLKVPSSSRIGVYVDHSAGTLSFYSVSDTMKLLHRLHTTFTQPLYA
GFLLPSYTATVRLCDSQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacttcagcatttcagtagatcagcttccagtaaataagttcagatgtccagtg
tgtctggatctcctgaaggatccagtggataccccgtgtggtcacagtttctgtaaggtg
tgtattaatggcttctgggatcaggaggattggattggtgtctacagctgtcctaagtgc
agacacactttcaatccaaggcctgttctacacagaaacatcatgctggaaaaactgatg
gagaaagtaaagaactcagaagcccaagctgctcgttatgacgctggacctggagatgtg
gaatgtaatttatgcagtgggagaaaacgcaaagccgtcaagtcgtgtctgatgtgtctg
aactccttttgtgaaactcatctgaaacctcactacgaagttccttcctggaagaagcac
aagttaatcgaagcctctgggaatctacaagagaagatctgctctgagcaccatgagatt
ttgaagatatactgtcgtaccgaccaaagcttcatctgttatctgtgtccgatgcatgaa
cacagaggacatgacacagttgcagctgcagcagaacgatctgaaaaacagactcagctg
aaggaggagcagatgaaattccagcagagaatccaggagaagcagaagaaggtgcaggag
ctgaaacaggatgtgaacattataaagctcagtgcacagacagcagtagatgacagtgag
aagatctttactgagatgatcagctccatggagaaaaagcgctcggaggtgacggagctg
atcagagatcaggagaaggctgaactgagtggagctgaacgactcctggagcaactggag
caggagatttctgatcttcagaggagaatcactgagctggagcagctttcacacacacac
gatcacatccatttcctccagagtttccagtctctcagtgtatcttctggatgtgaggac
tcacccagcatcactgtccatcaacatctcacatttaatagagtgaggaaatcagtctct
gatctgaaaaagagatttgaggaactctgccaggaggaattcatcataattcatgaacat
gctgcagaagttcagatgattttaccctcagaaccaaagagcagagaagaatttctaaac
tatttctgtgatctgactctggatcccaacacagtacattattacctcattctgtctgag
aagaacaaagtggtgacacgcagtgagacaaagcagtcgtactctgatcatccagagaga
tttaactcctactgtcaggtgttgagtaaagagagtgtgtgtggacgctgttactgggag
atggagtggagcagtgagagaaatgtgttcatatcagtctcatataaagacatcagaagg
ataatatggggtgatgagtgtgtgtttggacacaacgatcagtcctggagtctgcagtgt
tcttcttcttctgttagtttctatcacaacaacattatgactgatctgaaagttccatca
tcctccagaataggagtgtatgtggatcacagtgcaggaactctgtccttctacagcgtc
tctgatacgatgaagctcctccacagactccacaccacattcactcagcctctatacgct
ggattcttgctgccttcttacacagcaactgtgagattatgtgattcgcaataa
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