Silurus meridionalis (southern catfish): 124401408
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Entry
124401408 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401408
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_6
Prok-RING_4
zf-RING_10
DUF5446
TraB_PrgY_gumN
DUF1890
UPF0242
ALS2CR8
DUF4446
Motif
Other DBs
NCBI-GeneID:
124401408
NCBI-ProteinID:
XP_046729660
LinkDB
All DBs
Position
18:25274565..25280719
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AA seq
550 aa
AA seq
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MAESSISVVQLSVNQFRCSVCLDLLKDPVATPCGHSFCNVCINGSWDREDWIGVYSCPLC
RHTFNPRPVLHRNNMLAEVVENLKNSETQTARWDAGPGDVECDLCSGGKRKAVKSCLMCL
VSFCETHLKPHYEVPSWKKHKLIEASGNLQEKICSEHDKLVEIYCRTDQSFICYLCTMHE
HRGHDTVAAAAERSEKQTQLKEEQMKFQQRIQEKQKKVQELKQAVNIIKLSARTAVDDSE
KIFTETISSIEKKYSEMMDMIRDQEKAELSRPERLLEQLDQEISDLQGKVNELEQLSHTH
DHIHFLQSFQSLGLSSVCEDSTSVTVNRLSLDGVRKSVSDLKKRFKEFIKIPQHDAAVKM
ILPSDPKSREDFLNYFCDLTLDPNTVNYYLILSERNKVVTVSETKQPYSDHPERFDSYEQ
VLSKESVCGRCYWEVEWNGVEMDISVSYKDMSRKGRGDECVFGCNNQSWSLECSSSSFCF
WHNNNYINHKVPSSSRIGVYVDHSAGILSFYSVSDRMKLLHRVHTTFTQPLYAGFWIGGK
GSTVRLYDLK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatccagcatttcagtagttcagctttcagtaaatcagttcagatgttcagtg
tgtctggatctcctgaaggatccagtggctaccccgtgtggtcacagtttctgtaacgtg
tgtattaatggctcctgggatcgggaggattggattggtgtctacagctgtcctctgtgc
agacacactttcaatccaaggcctgttctacacagaaacaacatgctggctgaagtggtg
gagaacctgaagaactcagaaacccaaactgctcgttgggacgctggacctggagatgtg
gaatgtgatttatgcagcgggggaaaacgcaaagccgtcaagtcgtgtctgatgtgtctg
gtctccttttgtgaaactcatctgaaacctcattatgaagttccttcctggaagaagcac
aagttaatcgaagcctctggaaatctacaagagaagatctgctctgagcatgataaactg
gttgagatctattgtcgtaccgaccaaagcttcatctgttacttgtgtacgatgcatgaa
cacagaggacatgacacagttgcagctgcagcagaacgatctgaaaaacagactcagctg
aaggaggagcagatgaaatttcagcagagaatccaggagaagcagaagaaggtgcaggag
ctgaaacaggctgtgaacattataaagctcagtgcacggacagcagtagatgacagtgag
aagatctttactgagacgatcagctccattgagaaaaagtactcagagatgatggatatg
atcagagatcaggagaaggctgaactgagtcgacctgaacgactcctggagcaactggat
caggagatttctgatcttcaggggaaagtcaatgagctggagcagctttcacacacacac
gatcacatccatttcctccagagttttcagtctcttggtctctcttctgtatgtgaggac
tcgaccagtgttaccgtcaatcgtctctcacttgacggagtgaggaaatctgtctctgat
ctgaaaaagagatttaaggaattcatcaaaatccctcaacatgatgcagcagttaagatg
attttaccctcagatccaaagagcagagaagattttctgaactatttctgtgatctgact
ctggatcccaacacagtaaattattacctcattctgtctgagaggaacaaagtggtgaca
gtcagtgagacaaagcagccgtactctgatcatccagagagatttgactcctatgagcag
gtgttgagtaaagagagtgtgtgtggacgttgttactgggaggtggagtggaacggtgtg
gaaatggacatatcagtctcatataaagacatgagcaggaaaggacggggtgatgagtgt
gtgtttggatgcaacaatcagtcctggagtctggagtgttcttcttcttctttctgtttt
tggcacaacaacaattatattaatcacaaggttccttcatcctccagaataggagtttat
gtggaccacagtgcaggaattctgtccttctacagcgtctctgataggatgaagcttctc
cacagagtccacaccacattcactcagcctctatacgctggattctggataggtggtaaa
ggatccactgtgagattatatgatttgaaataa
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