Silurus meridionalis (southern catfish): 124401424
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Entry
124401424 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401424
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401424
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_6
zf-RING_10
zf-RING_5
U-box
CCDC47
Zn_ribbon_SprT
TMA7
LMBR1
Motif
Other DBs
NCBI-GeneID:
124401424
NCBI-ProteinID:
XP_046729694
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All DBs
Position
18:complement(25267098..25271918)
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AA seq
569 aa
AA seq
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MAESSISVDHFLVDQLSCPVCLDLLKDPVTIPCGHSFCKVCINDCWDQEDQKMVYSCPQC
RRTFTPRPVLHRNNMLAEVVEKLKKTEVRAASPAHCYAGPGDVECDFCSGRKHKAVKSCL
MCLASFCETHLKPHYEVAGLKKHSLIEASGNLQEKICSEHDKVLEIYCRTDQSFICYLCV
TDEHRSHDTVSVKAYRTEQQTELKEEQMKFQQRIQEKQKKVQELKQAVNIIKLSAQTAVD
DSEKIFTEMISSMEKMRSEVTELIRDQEKAELSGAERLLEQLEQEISDLQRRITELEQLS
HTHDHIHFLQSFQSLSVSSGCEDSPSITVHQHLSFDRVKSVSDLKRDLRNSTQTQTLSIV
FFSTAAAVQMILPSEPMSREEFLNYFCDLTLDPHTVHHYLILSEKNKVVTRSWTKQSYSD
HPERFDSYCQVLSKESVCGRCYWEVEWSSESNVYISVSYKDIRRKGRGDDRWFGGNKQSW
SLRCSSSLCFCHNNVKTDLKVPSSSRIGVYVDHSAGTLSFYSVSDTMKLLHKVQTTFTQP
LYAGFWIRFNGDTVRLCDPNEKINNLSFS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatccagtatttcagtagatcattttttagtggatcagttgagctgtccagtg
tgtctggatctcctgaaggatccagtgactatcccgtgtggtcacagtttctgtaaggtg
tgtattaatgactgctgggatcaggaggatcagaaaatggtctacagctgccctcagtgc
agacgcacgttcactccaaggcctgttctacacagaaacaacatgctggctgaagtggtg
gagaaactgaagaagactgaagtccgagctgcttctcctgctcactgttacgctggacct
ggagatgtggaatgtgatttctgtagcgggaggaaacacaaagccgtcaagtcgtgtctg
atgtgtctggcctccttttgtgaaactcatctgaaacctcattatgaagttgctggtctg
aagaaacactcattaatcgaagcgtctggaaatctacaagagaagatctgctctgagcat
gataaagtcctggagatctactgtcgtaccgaccaaagcttcatctgttatctgtgtgtg
acggatgaacacagaagccacgacaccgtctcagttaaagcctacagaactgaacaacag
actgagctgaaggaggagcagatgaaattccagcagagaatccaggagaagcagaagaag
gtgcaggagctgaaacaggctgtgaacattataaagctcagtgcacagacagcagtagat
gacagtgagaagatctttactgagatgatcagctccatggaaaaaatgcgctcggaggtg
acggagctgatcagagatcaggagaaggctgaactgagtggagctgaacgactcctggag
caactggagcaggagatttctgatcttcagaggagaatcactgagctggagcagctttca
cacacacacgatcacatccatttcctccagagtttccagtctctcagtgtatcttctgga
tgtgaggactcacccagcatcactgtccatcaacatctctcatttgatagagtgaaatca
gtctctgatctgaaaagagatttgaggaactctacacaaactcagacactttcaattgtg
tttttctccacagctgcagcagttcagatgattttaccctcagaaccaatgagcagagaa
gaatttctgaactatttctgtgatctgactctggatccccacacagtacatcattacctc
attctgtctgagaagaacaaagtggtgacacgcagttggacaaagcagtcgtactctgat
catccagagagatttgactcctactgtcaggtgttgagtaaagagagtgtgtgtggacgc
tgttactgggaggtggagtggagcagtgagagtaatgtgtacatatcagtctcatataaa
gatatcagaaggaaaggacggggtgatgatcgctggtttggaggaaacaaacagtcctgg
agtctgcgttgttcttcttctctctgtttctgtcacaacaacgttaaaactgatctcaaa
gttccatcatcctccagaataggagtgtatgttgatcacagtgcaggaactctgtccttc
tacagcgtctctgatacgatgaagctcctccacaaagtccaaaccacattcactcaacct
ctatacgctggattctggatacgttttaacggagatactgtgagattatgtgatccgaat
gaaaagattaataatctgagtttcagttaa
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