Silurus meridionalis (southern catfish): 124401459
Help
Entry
124401459 CDS
T08004
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401459
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124401459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-B_box
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
PRP1_N
zf-RING_10
zf-RING_6
Fib_alpha
Peptidase_S46
DUF2383
AMP-binding_C_2
MutS_III
Motif
Other DBs
NCBI-GeneID:
124401459
NCBI-ProteinID:
XP_046729760
LinkDB
All DBs
Position
18:26386405..26392686
Genome browser
AA seq
566 aa
AA seq
DB search
MAEASISVDQDQFICPVCLDLLKDPVTVPCGHSFCKVCINGCWDQENQKSVYSCPQCRDI
FIARPVLCKNSMLAEVVEKLWKKTEVQAASPDHCYARPGDVECDFCTKRKHKAVKSCLVC
VASFCEIHLKPHLEVPALKKHTLTEASAKLNDEICSEHNRMIEIYCKTDQTCICYMCMMD
KHKGHDTFTASIERAEKQSELKEEQMKSQQRIQEKQKKVQELKQAVNTIKVSSEQRQTAV
EDTERIFTELISSIEKKRLEVMEMIRAQEEAELSRPERLLEELEQEIADLQRRVTELEQL
SHTHDHIHFLQSFQSLCVSAGHWSPQLVRPDFHMSSITVHQHHFSDEIRKYFSDLKMKLE
EFCEEEFYKIPAQVQSFFSEPQSRDEFLKYSCYLTLDPNTAHRNLILSEKNRAVRYSVRE
QWYSDHPERFDYWPQVLCEESVCGRCYWEVEWSSNANSVVSISVSYKDIRRKGRGDECGF
GYNNQSWSLQRSSSSLCFDHDNIKTYLGVPAPSRIGVYVDHSAGTLSFYSVSDTMKLLHR
VQTTFTQPLYAGFGLYYSTVRLCDPE
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccagtatttcagtagatcaggatcagttcatctgtccagtgtgtctggat
ctcctgaaagatccggtgactgtcccgtgtggtcacagtttctgtaaggtgtgtattaat
ggctgctgggatcaggagaatcagaagagcgtctacagctgtcctcagtgcagagacatt
ttcattgcaaggcctgttctatgcaaaaacagcatgctggctgaagtggtggagaaacta
tggaaaaagactgaagtccaagctgcttctcctgatcactgttacgccagacctggagat
gtggagtgtgatttctgcaccaagagaaaacacaaagccgtcaaatcctgtctggtgtgt
gtggcttcattctgtgaaattcatctaaaacctcatctagaggttcctgctttgaaaaaa
cacacattaactgaagcctcagcaaaactaaatgatgaaatctgctctgaacataacagg
atgattgagatctactgcaaaactgatcaaacctgcatctgttatatgtgtatgatggat
aaacataaaggacatgacaccttcacagcctcaatagaacgagctgagaaacagagtgag
ttaaaggaggagcagatgaaatcccagcagagaatccaggagaagcagaagaaggtgcag
gaactaaaacaggctgtgaacactataaaggtgagcagtgagcagagacagacagcagtg
gaggacactgagaggatctttactgagctgatcagctccatagagaaaaagcgtttggag
gtgatggagatgatcagagctcaggaggaggctgaactgagtcgacctgaacggctcctg
gaggaactggagcaggagatcgctgatcttcagaggagagtcactgagctggagcagctt
tcacacacacacgatcacatccatttcctccagagtttccagtctctctgtgtctctgct
ggacattggtctcctcaattagtaagaccagattttcacatgtccagcatcactgtccat
caacatcacttctcagacgaaataagaaaatatttctcagatctgaagatgaaacttgag
gaattctgtgaggaggaattttacaaaatccctgcacaagttcagtcttttttctcagag
ccacagagcagagatgagtttctgaaatattcatgttatctgactctggatcccaacacg
gcacatcgtaacctcattctgtctgagaagaacagagcagtgagatacagtgtgagagag
cagtggtactctgatcatccagagagatttgactactggcctcaagtgttgtgtgaggag
agtgtgtgtggacgctgttactgggaggtggagtggagcagtaatgctaatagtgttgtg
tccatttcagtctcatataaagacatcagaaggaaaggacggggtgatgagtgtgggttt
ggatacaacaatcagtcctggagtctgcagcgttcttcttcttctctctgtttcgatcac
gacaacattaagacttatctcggagttccagcaccatccagaataggagtgtatgtggat
cacagtgcaggaactctgtccttctacagcgtctctgacaccatgaagctcctccacaga
gtccaaacaacattcactcagcctctatatgctggatttggactttactattctacagtg
agattgtgtgatccagaataa
DBGET
integrated database retrieval system
