Silurus meridionalis (southern catfish): 124403085
Help
Entry
124403085 CDS
T08004
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124403085 (upf1)
03015 mRNA surveillance pathway
124403085 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124403085 (upf1)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124403085 (upf1)
5.6.2.5 RNA 5'-3' helicase
124403085 (upf1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124403085 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
124403085 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
AAA
Motif
Other DBs
NCBI-GeneID:
124403085
NCBI-ProteinID:
XP_046732626
LinkDB
All DBs
Position
20:4368645..4383189
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGDDAVGKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPMPPPGYLGQMNGPATGRGAPKGKTGGRGGRQRNRGVGNHGSGQTNMANS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaggcgtacgggccgagctcgcagactctcaccttcctggacacggaggaa
gcggagctgctcggagccgacacgcagggctcggagttcgagttcaccgacttcaccctg
ccgagccagactcaaacccaaggccaaacccagagtcagctcgacaaccaggtgaatgga
cctgatggagttctgcagaacggcgacgatgctgtggggaaagccagccaacttctggca
gagctgaattttgaagaagatgaagaggacacttattacaccaaggatctccctgtgcac
gcatgcagttactgtggcatacatgatcctgcctgtgtggtgtattgcaacaccagcaaa
aagtggttctgcaatggacgtggcaacacctctggcagccatattgtcaaccatttggtg
cgtgcaaaatgtaaggaggtgaccctgcataaagatggccctttgggggagaccgtgttg
gagtgttacaactgtggatgtcgcaacgttttcctcctgggattcatcccggccaaggca
gattctgttgtggtgctcctgtgcaggcagccatgtgccagtcagagcagtctgaaggac
attaactgggacagctctcagtggcagcctttgattcaggaccggtgctttctgtcctgg
cttgtgaagatcccgtctgagcaggagcagcttagggcccgccagatcaccgctcagcag
atcaacaaacttgaggagctctggaaggagaacccaactgcaacacttgaggatttggag
aagcctggtgtggatgaagagcctcagcatgtgctgctacgctatgaagatgcctaccag
tatcagaacatctttggcccgttggttaaactggaggcggattatgacaagaagcttaaa
gagtcccagacccaagacaatataactgtcaggtgggacttgggcctgaataaaaagagg
attgcttatttcacccttcccaagacggactcaggtgacatgcggcttatgcaaggggat
gaaatctgcctccgttataagggagacttggctcctctttggaaggggattggacatgtc
atcaaggtcccggacaactatggagatgagattgctatagagctgaggagcagtgctgga
gctcccgtagaggtgcctcacaacttccaggtcgattttgtgtggaaatccacttccttt
gaccgcatgcagagtgccctaaagacatttgcggtagatgagacctcagtgtctggttac
atctatcacaagttgcttggccatgaggtggaggatgtgatcattaagtgccaattaccc
aagcgcttcactgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaag
acggtgctgcagcgtcccctcagtctaatccagggacctcctggtactggcaaaactgtt
acctcagcaactattgtttaccatctggctagacagggcaacgggccggtgctggtatgt
gccccgagcaacattgcagtagatcagctgacagagaaaattcaccaaacaggactgaag
gtggtgcgtctatgtgccaagagccgagaggccattgactctcctgtgtcgttcctggct
ctgcacaaccagatccgcaacatggacagcatgcctgaactgcaaaagttgcaacagctg
aaggatgaaacaggagaattgtcttcttcagatgagaagcgctacagggccttgaaacgt
actgcagaaagggagctactcatgaatgcagatgtgatctgttgtacttgtgtgggtgcg
ggtgatcctcgtctggctaaaatgcagttccgctccatcctgatagatgagagcacccag
gctactgagccggagtgcatggtacctgtagtgctgggagcaaagcagctgatcctggtg
ggtgatcactgccagctaggtccagtggtcatgtgtaaaaaggctgccaaggcgggtctg
tcgcagtctctctttgagcgactggtagtgctgggcatcagacccatccgtctgcaagtg
caataccgtatgcaccctgcactcagcgctttcccctcaaatatcttttatgaaggatct
ctacagaatggagttacagctgctgaccggatcaagaagggatttgatttccagtggcct
cagccagataagcccatgtttttctatgtgacacagggccaggaggagattgctagttcg
ggcacctcctacctgaacaggactgaggctgctaatgtggagaagatcactactcgctta
ttgaaggccggagccaaacctgaccagattggcatcatcactccatatgagggccagcgc
tcctacctggtgcagtacatgcagttcagcggttcccttcatactaagctctatcaggag
gtagagatagccagcgttgatgccttccagggccgtgagaaggacttcattattctgtct
tgtgtcagggccaatgagcaccaaggcatcggctttctaaacgatccgcgcaggctgaat
gtagccctcaccagagccagatatggggtgatcattgtggggaatcctaaagctctgtct
aagcagccactctggaaccatttgctcaactactacaaggagcagaaggttctggtggag
gggcctctcaacaacctgagagagagcctcatgcagttcagcaaacctcgcaagctggtc
aatactattaatcctggagctcgtttcatgagcactgccatgtatgatgccagggaggct
atgatccccggctcagtgtatgaccgcagcaacactggccgcccatccaacatgtatttt
caaactcacgaccagatcggtatgattggtgctgggccaaaccccatggcttccatgaat
attcccataccctttaacctggtcatgccccccatgcccccaccggggtacctgggacag
atgaatggcccagcgactggtcgcggagcaccaaagggtaagacaggtggtcgcggaggg
cgtcagcggaatcgtggcgtaggtaaccatggcagcggacagaccaacatggcaaatagt
caggccagtcaggatctggtgtctcagcccttctcccagggccccctgacacagggctac
attaccatgagccaaccctcacagatgagccagccaggcttgtcccagcctgaactttcc
caggacagttacctgggtgatgagttcaagtcgcagatggatgtggctctgtcccaggat
tccacttaccagggtgaacgggcataccagcatggaggagtgaccggactctctcagtac
tag
DBGET
integrated database retrieval system
