KEGG   Sulfuracidifex metallicus: RQ359_002353
Entry
RQ359_002353      CDS       T09529                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
smet  Sulfuracidifex metallicus
Pathway
smet03030  DNA replication
smet03410  Base excision repair
smet03420  Nucleotide excision repair
smet03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RQ359_002353
   03410 Base excision repair
    RQ359_002353
   03420 Nucleotide excision repair
    RQ359_002353
   03430 Mismatch repair
    RQ359_002353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smet03032]
    RQ359_002353
   03400 DNA repair and recombination proteins [BR:smet03400]
    RQ359_002353
Enzymes [BR:smet01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RQ359_002353
    6.5.1.6  DNA ligase (ATP or NAD+)
     RQ359_002353
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RQ359_002353
DNA replication proteins [BR:smet03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RQ359_002353
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RQ359_002353
DNA repair and recombination proteins [BR:smet03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RQ359_002353
   NER (nucleotide excision repair)
    Other NER factors
     RQ359_002353
   MMR (mismatch excision repair)
    Other MMR factors
     RQ359_002353
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CTD5
Other DBs
NCBI-ProteinID: WOE50780
LinkDB
Position
complement(2169276..2171051)
AA seq 591 aa
MDFKLIAEYFDKLEKISSRIQLTNLLSELLKNSDQSSIDKVIYLVQGKLGPDFAGIPELG
IGEKFLVKACSIATGVPEKDIEELGKKSGDLGQVVFDLKSKGSNSNILSFLGVNAETDLS
VDTVYENLFKIATQSGEKSRELKIGLLAGLLQKASPLEAKFIIRFVEGRLRVGIGDSTII
DALGQAFGISPNVIERAYNLRADLGSIGKLVILKGEEELKQIKPKVGIPIRPMLGERLQD
PVEILNKLGGSAMADYKYDGERAQIHKNKDTIEIFSRRMENITSQYPDVAEMVKQNLSLD
EAIVEGEIVAVDSNTGELRPFQDLMHRKRKNNIESGIKDYPVNLFLFDLMFANQEDFTNK
PLLERRKLLESSVKPNSEVKIAKYIITSDVNEVKKFFLQAISDGAEGLMLKSISQSSIYQ
AGARGWLWIKFKKDYQSEMADTVDLVIVGGFYGKGKRGGKLSSLLLASYNPTTDTFDSVC
KVASGFTDEELDNIQKKLLDIKRNSKHPRVNSKLEADVWVEPIYVVEIIGAEITLSPLHL
CCFGQFQEDAGLSIRFPRFIRWRDDKSPEDATTPSEIMEMYKAQLKKVQVS
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggactttaagctaatagctgaatacttcgataagctggagaaaatttcttctaggata
caactaactaaccttctttctgaactcctcaaaaactcagaccaatcaagtatagacaag
gtaatttacttagtacaaggtaaacttggtcctgatttcgctgggattcctgagttgggt
ataggagagaaatttttagttaaagcttgtagcatagcaacaggagttcccgaaaaagac
attgaagaattaggtaaaaaaagcggggatttaggtcaagttgtatttgatctcaaaagt
aagggaagtaactcgaacattttatcatttttaggagtaaatgccgaaactgatctcagc
gtcgacactgtttatgaaaatctctttaagatagctacacaatcaggagaaaaaagccgt
gaacttaaaattggtcttctagcaggtcttttacaaaaagcatctcctctagaggctaaa
tttatcataagatttgtggaaggaaggctaagagtaggaataggcgattctactataatt
gatgctttgggtcaagcttttgggataagtccaaatgtaattgaacgtgcatacaatctt
agagctgacttaggttctattggcaagcttgttatattaaaaggtgaggaggaattaaaa
caaattaaacctaaggtaggaataccaattagaccaatgttaggtgaaaggcttcaggat
ccagttgaaattttgaataaattgggcgggagtgcgatggcagattacaaatatgatgga
gagagagcacaaattcataaaaataaagatacaatagagatcttctctagaagaatggag
aatataacgtctcagtatcctgacgtagcggagatggttaaacaaaaccttagtttggac
gaggccatagttgaaggagaaatagttgcagtggatagtaataccggagaactcagacct
tttcaggatttaatgcataggaaaaggaagaataacatagagtcaggaattaaggactat
ccagtaaatttatttctgtttgatttaatgtttgctaatcaggaagattttaccaataag
ccattacttgagcgcagaaagcttcttgagtcttcggtgaagccaaattctgaggtaaag
atagctaagtacataattacaagtgacgtgaatgaagtcaaaaaattcttccttcaggct
attagcgacggcgcagaaggattgatgctcaagtcaatctcacaatctagcatatatcag
gcaggagcaagagggtggttatggataaagttcaagaaggactatcaaagcgaaatggct
gatacggtagatctagttattgttggcggtttttacggcaaaggaaaacgcggaggtaaa
ctgagttctcttctgttagcatcttataatccgacaactgacaccttcgacagcgtatgt
aaggtggcctctggcttcacagacgaagaattagataatatacagaaaaaacttctagat
ataaagagaaattcaaaacatcctagggttaattctaagttggaagccgacgtttgggtg
gagccgatttatgttgttgaaataataggagctgagataacgctatcccctcttcactta
tgctgttttggacagtttcaagaagatgctggactttcaattagatttccaagattcata
agatggcgtgatgataaatctccagaagatgctactactccctctgaaataatggaaatg
tataaggctcagctaaagaaagttcaagtctcttag

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