Sphingosinicella microcystinivorans: SmB9_21330
Help
Entry
SmB9_21330 CDS
T05811
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smic
Sphingosinicella microcystinivorans
Pathway
smic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SmB9_21330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smic03400
]
SmB9_21330
Enzymes [BR:
smic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SmB9_21330
DNA repair and recombination proteins [BR:
smic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SmB9_21330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBE34475
LinkDB
All DBs
Position
complement(2245226..2247715)
Genome browser
AA seq
829 aa
AA seq
DB search
MARRADPLKDYNARRDFKKTPEPAGTPGRAEGNSFVVQKHAATRLHYDFRLELDGVLKSW
AVTRGPSLNPDDKRLAVRTEDHPLSYGGFEGNIPKGEYGGGTVMLWDEGTWEPVAGKDPR
QTLKDGHLHFTLHGKRMKGEWLLVRMKPRAGEKRENWLLRKIDDTHAGGSDELVETVLTS
VETGRSMAQIAAGAPAVSLKGKRGKAFTRAMTEARSATVRAKPKSAKSGRLPAFRAPQLA
TLVDHVPTGTEWMHEIKFDGYRCLLAANGDKARIYTRTGLDWSDRFAPLVEAAAALDLPP
CLIDGEIVVMDRNGNPSFSALQKALTEGSDGFVLFGFDLLELDGEDLAQLPNIARKQRLS
GLLSPDGPIRYADHVVGAGEKLYEAMCGAGQEGIICKRVDARYVGKRTKNWLKVKCTRRQ
EFVIVGWTASSAKARPFASLLLAQNRANGLAYAGKAGTGFDADTFAMLEGKLRPLARKTA
PVAVPRAEARGANWVTPKLVAEIAFAEFTSDDRLRHASFIGLREDKMPGDIAPETPAPVS
DGDDGVTITHPDRVIFPEAKITKGELADYYRQVGAVMLPWLAHRPASLVRCPQGRARQCF
FQKHDSGSFGPAVHHIPIVEKNGKPDDYLYVENTQGILACVQMGTIEFHGWGARVEDVER
PDRMVFDLDPDEAIGFDIVKTAAKDLRKHLDDIGLISFPMLTGGKGVHVVVPLTPGAEWD
AVKDFAERFARAIAELEPDRFTATMSKAKRKGRIFIDWLRNQRGSTAIMPYSARARPGAP
VAAPISWKELDGIEKAGTFTVKDAKKLLKRAGSRDLAGWGVAAQNLPGI
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcacgccgcgcggacccgctcaaagactacaacgcccggcgcgatttcaagaagaca
cctgaacctgccggaacgccggggcgcgcggagggcaacagtttcgttgtgcagaagcac
gccgcgacccgcctgcactacgatttccgcctcgagcttgatggcgttctcaagagctgg
gccgttacgcgcggccccagcctcaaccccgacgacaagcgccttgcggtccgcaccgaa
gaccacccgctcagctacggcggttttgagggcaatatcccgaaaggcgaatacggcggc
ggcacggtgatgctgtgggacgaaggcacgtgggagcctgtcgccgggaaggatccccgc
caaacgctgaaggacggtcatctccacttcaccctccacggcaagcgcatgaagggcgaa
tggctgctcgtgcgcatgaaaccgcgcgcgggggaaaagcgggagaactggctgcttcgg
aagatcgacgatacccacgcgggcgggtcggacgagcttgtcgaaacggtgctgaccagc
gtcgagacgggacgatcgatggcgcagattgcggcgggcgcgccagcggtctcgctgaaa
ggcaagcgcggcaaggccttcacccgcgccatgaccgaggcgcggagcgcgaccgtgcgc
gcgaaacccaagagcgcaaagtccggccgcctgccggcctttcgcgccccgcagcttgcg
acgctcgtcgatcatgtgcccacgggcacggaatggatgcacgagatcaagtttgatggc
taccgctgcctgctcgccgcaaacggcgacaaggcgcgcatctacacacgtacggggctt
gattggtcggatcggttcgcgccgctcgtcgaagctgcggcagcgctcgatctgccgccg
tgcctcatcgacggcgagatcgtggtgatggaccggaatggcaatccgagcttcagcgct
ttgcagaaggccctcacggagggcagcgacggcttcgtactgttcggcttcgacctgctc
gaactggatggcgaagacctcgcgcagcttcccaatatcgcgcgcaaacagcgcctctcg
gggctgctgtccccagacggccccattcgttacgccgatcatgtcgtgggcgcgggagaa
aagctctatgaggcgatgtgcggcgcggggcaggaaggcatcatctgcaagcgcgtcgat
gcgcgctacgtggggaaacgcacgaaaaactggctgaaggtgaaatgcacccgccgccag
gaattcgtgatcgtcggctggacggcgagcagcgcgaaggcgcggccgttcgcgtcgctg
ctgctcgcgcagaaccgtgcaaatggacttgcctatgcaggcaaagcgggcacaggattc
gatgccgatacgttcgccatgctcgaaggcaagctgcgccccctcgcacgcaagaccgcg
ccggtcgcggtcccgcgcgcggaagcacggggcgcgaactgggtgacgccgaaactcgtc
gccgaaattgcctttgccgaattcacgtccgatgatcgtctacgccatgccagtttcatc
gggttgcgggaggacaagatgccgggcgatatcgcacccgaaaccccggccccggtcagc
gatggagatgacggcgtaacgattacccatcccgatcgcgtgatcttccccgaagcgaag
atcaccaagggcgagctcgccgattattatcggcaggtcggcgccgtcatgctgccatgg
ctggcgcatcgcccggcaagccttgtccgctgtccgcagggccgtgcgcgtcagtgtttc
ttccagaagcacgacagcggcagcttcgggccggccgtgcatcacattcccatcgtcgaa
aagaacggcaagccggacgattatctctatgtcgagaatacgcagggcattctcgcctgc
gtccagatgggcacgatcgagttccacggctggggtgcccgcgtcgaggatgtcgagcgg
cctgaccggatggtcttcgatctcgatcccgacgaggcgatcggcttcgacatcgtgaaa
accgccgcgaaggatctgcgcaagcatctggacgacatcggtctcatcagcttcccgatg
ctcaccggcggcaaaggtgtccatgtcgtcgtccctctcacacccggcgcggagtgggat
gccgtcaaggatttcgccgaacgcttcgcgcgcgccatcgccgagttggagcccgatcgg
ttcacggccacgatgtcgaaggcgaaacgcaagggacgcatcttcatcgattggctgcgc
aaccagcgcggctccaccgcgatcatgccttatagcgcgcgcgcaaggcccggagcgccc
gtggctgcgcccatctcatggaaagagctggacggcatcgaaaaggccggcaccttcacc
gtgaaggacgcgaaaaaactcctgaaacgcgccggcagccgcgatctcgccggatggggc
gttgcggcccagaatctaccgggcatctag
DBGET
integrated database retrieval system
