Salvia miltiorrhiza (redroot sage): 130997416
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Entry
130997416 CDS
T09291
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130997416
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smil01002
]
130997416
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smil04121
]
130997416
Enzymes [BR:
smil01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
130997416
Peptidases and inhibitors [BR:
smil01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
130997416
Ubiquitin system [BR:
smil04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
130997416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
Ubiquitin_2
PI3K_rbd
Malt_amylase_C
SASP
Motif
Other DBs
NCBI-GeneID:
130997416
NCBI-ProteinID:
XP_057778702
LinkDB
All DBs
Position
8:27688348..27706041
Genome browser
AA seq
1117 aa
AA seq
DB search
MTLLTPPPIDQAEGEQMLVPHADFAPDGPQPMEVAPSEATTNAVDAQVVDEPPSARFTWK
IENFSKVNMKKQYSDVFLVGGYKWRILTFPKGNNVDHLSMYLDVADSSTLPYGWSRYAQF
SLSVINQIHSKFTIRKDTQHQFNSRESDWGFTSFMPLSELYDPGRGYLVNDTCIIEADVA
VRKVVDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDNPSG
SIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT
VVEGTIQQLFEGHHMNYIECINVEYKSTRKESFYDLQLDVKGCKDIYASFDKYVEVERLE
GDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFVRDTMVKINDRYEFPLQLDLD
RENRKYLSPEADSSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKED
MKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDTEKIICNVDEKDIAE
HLRIRLKKEQEEKEQKRKEKAEAHLYTIIKVARDEDLVHQIGKDIYFDLVDHDKVRQFRI
QKQLSFNSFKEEVAKEVGIPVQFQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSN
KANNAELKLFLEVAIGLEMQPLPPPEKTKEDILLFFKLYDPIKEELRYVGRLFVKGNGKP
MDILKKLNEMAGFALDEEIELFEEIKYEPNVMCEHIDKKLSFRSSQLEDGDIICFQKSPQ
GLSSEQCIYPTVSAFLIYVHNRQVVRFRSLEKPKEDEFCLELSKQNNYDEVVEYVARHLG
LDDPSKIRLTSHNCYSQQPKPQPIKYRGAERLTDMLVHYNQISDILYYEVLDIPLPELQG
LKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVINDLKRKVELSHPDAELRLLEVFYHKIY
KIFPLQEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFMKDTAQNQQVHNFGDPF
FLAINDNETLGEIKMRIQKKLHVLDEDYSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVY
GAWEQYLGLEHSDNTPKRSYAANQNRHTFEKPVRIYN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgactcttcttacacctcccccaatcgaccaggcagaaggcgagcagatgctggtaccg
catgctgattttgccccagacggtcctcaacctatggaagttgctccctctgaagcaaca
acaaatgccgtggatgcacaagtggtagatgaaccgccatctgcacggtttacttggaaa
atcgagaatttctcgaaggtgaacatgaagaaacaatattctgatgttttccttgttgga
ggatacaaatggagaattcttacgttcccaaaagggaacaatgttgatcatctgtctatg
tatctggatgttgcggactcttctactttaccctatggttggagcagatatgcacaattt
agtttgtctgtgattaatcaaattcacagcaaattcacaataaggaaagatacgcaacac
cagttcaattctagagaaagtgattggggattcacctcgttcatgccacttagtgaactt
tatgaccctggtcgtggttaccttgtgaatgatacatgtataattgaggctgatgttgct
gttcgtaaagttgttgattactggtcccatgactcaaagaaagaaacaggttatgtaggg
ctgaagaatcagggtgctacttgttatatgaactcccttctccagacactgtatcatatt
ccttattttagaaaggctgtataccacatgccaacaacagaaaatgataacccatctggt
agcatccctttggcccttcaaagcttgttctataagttgcagtacagtgataccagtgtt
gcaaccaaggagttgacaaagtcttttggttgggatacatatgattcttttatgcagcat
gatgtccaagaactgaacagggttctctgcgaaaaacttgaagacaaaatgaaaggaact
gtagtggagggcacaatacagcaattatttgaggggcaccatatgaattacatagaatgt
attaatgtggagtacaaatcaacaagaaaggaatctttctatgatctgcagcttgatgtt
aaaggttgtaaagatatttatgcttctttcgacaaatatgtggaagtagaacgtcttgag
ggtgataacaagtatcatgctgagcagtatggattgcaggatgctaagaaaggtgtcctt
ttcattgatttccctcctgttcttcagcttcagttaaaaagattcgaatacgattttgtt
cgtgatactatggtcaagataaatgatcgttatgagttccctttgcaacttgaccttgat
cgagagaacagaaaatatttatctcccgaggcagatagcagtgtccgcaacctatacact
cttcacagtgtcctggttcacagtggtggagtacatggtggacattattatgcttatata
cggccaacactttctgatcagtggttcaaatttgatgatgagcgtgtgaccaaagaagac
atgaagcgcgccttagaagagcagtatggtggtgaagaagagctaccgcagacaaatcct
ggattcaataactcaccattcaaatttaccaaatattcaaatgcatacatgcttgtttat
atacgtgaaagtgacacggagaaaataatttgcaatgtggatgagaaggacatagcagaa
catctaaggatacgattgaagaaagagcaggaagaaaaagagcaaaagagaaaggaaaag
gctgaggcccacctctacacaattatcaaggttgctcgtgatgaggatctagttcatcag
attggaaaggatatatattttgatcttgtggatcatgacaaagttcgccaattccgtatt
cagaaacagctatcttttaattcttttaaggaagaagttgcgaaggaggttgggatacca
gtgcaatttcaacgtttctggttatgggccaagcgccaaaatcacacataccgcccaaac
cgcccactcacacctcaagaggaagctcaatctgtaggtcagttgagagaagtatccaac
aaggcaaataatgccgagctaaaattatttctggaagtagcaattggcttggagatgcag
cctcttcctccgcctgagaagactaaggaggatattcttttgtttttcaaactttatgat
ccaatcaaagaggagctcagatatgttggaaggctgtttgtgaaaggcaatggcaaacca
atggatatactgaaaaagcttaacgaaatggccggctttgctcttgatgaagaaattgaa
ctctttgaggaaatcaagtacgaacctaatgtcatgtgcgagcacattgataagaagctc
agctttcgtagcagtcagctagaagatggtgacataatttgcttccaaaagtctcctcaa
ggtctgagcagcgaacaatgcatttatccgactgtctctgcttttctgatttatgtgcac
aatcgacaggtggttcgctttcgctcattggagaagcccaaggaagatgaattttgtctg
gaattgtcaaagcaaaacaattatgatgaagttgttgaatatgttgcccggcatcttggc
ttggatgatccctctaaaattaggcttacatcccataactgttattcacagcaaccaaag
ccccaacctatcaagtatcgaggtgctgaacgacttacagacatgcttgttcattataac
cagatttctgatatattatactatgaagtgctggatatccctttgcctgaactgcaaggc
cttaaaacattgaaagttgctttccatcatgccactaaggatgaagttgttattcacact
atcagattaccaaaacagagtactgtgggagatgtcatcaatgatctcaagcgtaaggtt
gagctgtctcatccggatgcagaactgagattgctggaggttttttatcataagatttat
aagatattcccgctccaagaaaagattgaaaatataaatgatcaatactggacgttgcgt
gcagaggagatacctgaggaggagaaaaaccttggtcctaatgatcgtttgattcatgta
taccattttatgaaagatactgctcaaaatcagcaggttcacaattttggagatcccttc
ttcttggccattaatgataacgagactttgggtgagattaaaatgcgcatacaaaaaaaa
ttgcatgttctggatgaggactactccaagtggaagtttgcatttttatctttgggccgg
cctgaatatcttcaagattcagacatcgtgtccagtcgttttcagagaagagatgtttat
ggtgcttgggaacagtacctaggactagagcactctgacaacactccaaagcggtcatat
gcagccaaccagaaccggcacacgtttgagaaacccgtcagaatctacaattag
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