KEGG   Salvia miltiorrhiza (redroot sage): 131000110
Entry
131000110         CDS       T09291                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03030  DNA replication
smil03410  Base excision repair
smil03420  Nucleotide excision repair
smil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131000110
   03410 Base excision repair
    131000110
   03420 Nucleotide excision repair
    131000110
   03430 Mismatch repair
    131000110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smil03032]
    131000110
   03400 DNA repair and recombination proteins [BR:smil03400]
    131000110
Enzymes [BR:smil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     131000110
    6.5.1.6  DNA ligase (ATP or NAD+)
     131000110
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     131000110
DNA replication proteins [BR:smil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    131000110
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     131000110
DNA repair and recombination proteins [BR:smil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     131000110
   NER (nucleotide excision repair)
    Other NER factors
     131000110
   MMR (mismatch excision repair)
    Other MMR factors
     131000110
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 131000110
NCBI-ProteinID: XP_057781860
LinkDB
Position
8:complement(3798702..3808150)
AA seq 810 aa
MFSLWSCRHTSILVSLSVNVAGKLHLRSSLSISSKHFLNFTKLNPSVRTMSGSSRSAFDV
LMANASKKKEPSQSQSAKPKGSSPRKRKSPSKSQTANLLPQNGDTPAPSSEHPEIVQNSS
SCGIGDAQVENPVNTGLKDSGLKQSKTGNADADKGLVAAKKPKVSISPDESVLELKKKAA
EFKVKRAAYWGEGKRVPFMFVAKALDAVSKESGRIVITGIVCNMLRTVMETAPDDLLAVM
YLLVNRIAPAHEGLELGIGESSIIKALAEACGAKEAHIKKQYEELGDLGLVAKASRSSQP
LLRKPEPLTVAKVFDTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLR
IGLAEQTLLAALGHAAVYSEKHSTPAKADNSLEEAAKIVKQVYSVIPVYDAIIPALLSGG
VWDLPKTCKFSPGIPVGPMLAKPTKGVSEIVEKFQGVEYTCEYKYDGERAQIHFMENGAV
EIYSRNAERNTGKFPDVVAAITRLKKPSATSFVLDCELVAYDREKQKILPFQILSTRARK
NVIMDEIKVSVCIYAFDMLYLNGQLLLQEQLNVRREHLYKSFQEEPGYFQFATAITSDDL
EEIQKFLDDAVNSSSEGLIIKTLKKDATYEPSKRSNNWLKLKKDYMDTIGDSLDLVPIAA
FHGRGKRTGVYGAFLLACYDNDKEEFQSICKIGTGFSEAMLEERSSSLRSKVIDKPKSYY
RYSDTVSPDVWFEPSEVWEVKAADLTISPVHRAAVGTIDPDKGISLRFPRLLRVREDKNP
EQASSSDMVADMYNAQKHTQKDNQDENEDV
NT seq 2433 nt   +upstreamnt  +downstreamnt
atgttctcgctttggtcatgccgccacacctcaatcctcgtctctctctctgttaacgtc
gccgggaaactccacctccgctcctctctctccatctcctctaagcatttcttgaatttc
accaagctgaaccctagtgtacgaacaatgtccggctcttcgcgttcagcctttgacgtt
ctcatggccaatgcttccaagaaaaaggaaccgtctcagtcgcaatcggcgaagccaaaa
ggatcatcaccccgaaaacgcaaaagcccatctaaatcccaaaccgctaatttacttcca
cagaatggcgataccccagcacccagctctgaacatccagaaattgtccagaactcgagc
tcgtgtggaattggagatgcgcaagtggagaatccagtgaatacggggttgaaagattcg
ggtttaaagcaaagtaagactggcaatgcggatgcggataaaggcttggtggcggcgaag
aagccgaaggtgtcaattagcccggacgagagcgtattggagttgaagaaaaaggcggca
gagttcaaagtgaagagggcggcgtattggggcgagggaaagcgagtgcccttcatgttt
gtggcaaaggcgttggatgctgtatcgaaggagtcaggtaggatagttatcacagggatt
gtgtgtaatatgctgaggacagtgatggagacggcgcccgatgatctgttggcggttatg
taccttttggtgaataggatcgcacctgcgcatgagggtttggagcttggtattggggaa
tcttcgattatcaaggcccttgcggaggcttgtggagctaaagaagcacatattaagaag
caatacgaggaacttggtgatttaggacttgtagcaaaagccagtcgttcgtcgcagcct
ttgctacgtaaaccagaaccattaactgttgcaaaagtctttgacacattccggctgatt
gccaaggaatctgggaaagatagtcaagagaagaaaaagaatcacataaaggcactacta
gttgcagcaactgattgtgaacctcaatatttgattcgtttgctccagacaaaattgcgt
atcggcttggcagaacaaactctgttggctgcactagggcatgctgctgtatattctgag
aagcattcaactcctgcgaaggctgataattctctagaagaagctgcaaaaattgtcaaa
caagtttattctgtaattccagtttacgatgcgataattccagctcttctttctggtggc
gtgtgggatctccccaagacatgtaaattttcccctggtattcccgttggacccatgcta
gctaaacctacaaaaggagtgtctgaaattgtggaaaagtttcaaggtgtggaatacacc
tgtgaatacaagtatgatggagaacgtgcccagatacactttatggagaatggcgcagta
gagatatacagtagaaatgcagagcgcaatactggaaaattcccagatgttgttgccgct
atcactagattaaaaaagccttctgctacatcatttgttcttgactgcgaacttgttgca
tacgatcgtgagaaacagaaaattctacctttccagatacttagtacacgtgctcggaaa
aatgttatcatggacgaaatcaaagtcagtgtttgcatatatgctttcgacatgctctat
cttaatggccaactactcctgcaggagcaactgaatgttcgtagagagcatctttacaaa
tcatttcaagaagaacctggttattttcagtttgccactgctataacatcagatgatctt
gaggaaatacaaaagtttctagatgatgctgttaattctagctctgaggggttgatcatc
aaaacattgaagaaagatgctacttatgaaccttcaaaaaggtcgaataactggctaaaa
ttgaaaaaagactacatggacactattggggattcactagatttggtccccatagctgca
ttccatggcagggggaaacgtactggtgtctatggtgcctttctccttgcttgttatgat
aatgacaaagaagaattccaaagcatatgtaaaattggaactggattttctgaagctatg
ctcgaagaacgttcttccagtcttcgctcgaaagttattgataagccaaagtcatattac
aggtattcagatacagttagtccggatgtatggtttgaacctagtgaggtttgggaggtc
aaagcagctgatcttaccattagccctgttcatcgtgctgccgttggcaccatagatcct
gacaagggaatttctctgaggtttccacgattacttcgtgtccgagaagataagaatcca
gaacaggcctcctcatctgatatggttgctgatatgtacaacgcacagaagcacactcag
aaagacaaccaagatgaaaatgaggatgtctga

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