Salvia miltiorrhiza (redroot sage): 131000679
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Entry
131000679 CDS
T09291
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131000679
09124 Replication and repair
03420 Nucleotide excision repair
131000679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131000679
03400 DNA repair and recombination proteins [BR:
smil03400
]
131000679
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131000679
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131000679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
131000679
NCBI-ProteinID:
XP_057782686
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All DBs
Position
8:8465073..8468451
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AA seq
440 aa
AA seq
DB search
MRVIFFFFFLLLLLVFFSRRVWNMSRKDAEMKFNREEDEEDDDGEGRGLEAWERTYADER
SWESLQEDESGLLRPIDNKTLYHAQYRRRLRTTTAARIQKGLIRYLYIVIDLSRAAGESD
YKPSRMMVVARQVEAFIREFFDQNPLSQVGLVTLKDGVANCLTDLGGSPESHIKALMGKL
TSSGDASLQNGLDLVQSLLNRIPSYGHREVLILYSALSTCDPGEIMETIQKCKASKIRCS
VIGLSAELYICKYLCQETGGSYYVALDEFHLKELIFEHAPPPPAIAEFAVANLIKMGFPQ
RAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP
ITPFDDVSPSVTNNPSKLPKNCFGCQLSLLNPGNMPAPSVSCPKCEQFFCLDCDIYIHES
LHNCPGCESFRHSKSVATVA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttatctttttctttttctttttattattattattagtatttttttcgagaaga
gtttggaatatgtcgcgtaaagatgcggaaatgaagtttaacagagaagaagacgaggaa
gatgatgatggagaaggtaggggacttgaggcatgggagagaacttacgcagatgagaga
tcgtgggagtctctgcaagaagacgagtctggccttctccgccctatcgataacaaaacg
ctttaccatgctcaatatcgtcgacgtcttcggaccacaacagctgctcggattcagaaa
ggattgattcgctatttgtacattgttattgacctttcacgggcagcgggagagtcggat
tataaacctagtcgaatgatggtggttgctcgacaagtggaagctttcattagagaattc
tttgatcaaaatcccttgagtcaagttggattagtgacattaaaagatggggttgcaaat
tgcctaacagaccttggtgggagtcctgagtcgcatatcaaagctttgatgggtaagttg
acgagctcaggtgatgcatccctccagaatgggttggatctcgtgcagagcctccttaac
cgaattccttcatatggtcaccgtgaagttcttatcttgtattctgcacttagtacttgt
gatccaggagaaatcatggaaacaattcaaaaatgcaaggcatctaaaatcaggtgctca
gtcattggtctctctgctgagctctacatttgcaaatatctttgtcaagaaactggtgga
tcatactatgttgcattagatgagtttcacctgaaagaattgatatttgagcatgcacct
ccacctccggctattgcagaatttgctgttgcaaatttgattaagatgggctttcctcaa
agagcagcagaaggcgtaatttcaatctgttcttgtcataaagaggctaaggttggcggg
ggttacacttgccccagatgcaaagctcgtgtttgtgaattgccgacagagtgccaaata
tgtggcctgacccttgtctcttctccacatttagccagatcgtatcaccacttatttcct
ataacacctttcgacgatgtgtcaccatcagtcacaaataacccaagcaagcttccaaaa
aattgcttcggttgccaactaagtcttctaaatcctggaaacatgccagctccatctgtt
tcttgtccaaaatgcgagcaattcttttgcctcgactgtgacatatacattcacgagagc
ctgcataattgcccaggttgtgagagcttcaggcattctaaatcagtcgctactgtggcg
tga
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